Hg_chrom3_TN10mRNA_6142
Organism: Heterodera glycines Gene Locus: chr3:8997400-9003717 Feature type: polypeptideProtein Sequence
Length: 1,152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.171 | 1.11 | 1.089 | 0.928 | 0.825 | 1.091 | 0.827 | 1.389 | 0.945 | 1.197 | 0.539 | 1.021 | 0.965 | 0.818 | 0.957 | 1.525 | 1.01 | 1.052 | 1.002 | 0.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5825
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.825
|
0.035
|
0.008
|
0.362
|
0.041
|
0.125
|
0.097
|
0.024
|
0.069
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008058
|
1.000
|
1.000
|
Hsc_gene_258.t1
|
Hsc_gene_257.t1;Hsc_gene_258.t1
|
— |
O75717.1 WD repeat and HMG-box DNA-binding protein 1 [Homo sapiens]
|
KAF7637747.1 Mcl1_mid domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.921|GO:0110165_0.916|GO:0005622_0.829|GO:0043226_0.759|GO:0043229_0.743|GO:0003674_0.710|GO:0008150_0.702|GO:0005488_0.645|GO:0016020_0.637|GO:0097159_0.539|GO:0003676_0.522|GO:0043227_0.516
|
IPR015943+3-387+|IPR022100+508-796+|IPR036322+11-329+|IPR048591+805-907+
|
— |
PF12341+508-796+Minichromosome_loss_protein,_Mcl1,_middle_region|PF20946+805-907+DNA_polymerase_alpha-binding_protein_Ctf4,_C-terminal_domain
|
— |
PTHR19932+6-1027+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
896-1152
|
1.000
|
1-895
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
124027.130
|
5.633
|
-15.000
|
21.962
|
9.201
|
47.830
|
52.170
|
11.024
|
10.938
|
58.507
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
2024.208
|
2596.642
|
2194.399
|
2246.569
|
2163.485
|
1993.347
|
2768.743
|
1858.654
|
1126.063
|
2078.172
|
1670.125
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.472
|
-0.346
|
0.142
|
— | — |
0.484
|
-0.206
|
0.718
|
— | — | — | — | — |
No JSON data available for plots.