SCN Proteipedia

Hg_chrom3_TN10mRNA_6145

Organism: Heterodera glycines Gene Locus: chr3:9029598-9040181 Feature type: polypeptide

Protein Sequence

Length: 2,195

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.869	1.229	0.787	0.833	1.139	1.472	0.64	1.663	1.498	1.348	0.856	1.394	1.734	0.736	1.302	0.976	0.553	0.725	0.946	0.536	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5827	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-J3_J4	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.177	0.173	0.043	0.613	0.137	0.374	0.405	0.035	0.500	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001979	3.000	1.000	Hsc_gene_15556.t1	Hsc_gene_15556.t1	—	P91443.1 Unconventional myosin heavy chain 6 [Caenorhabditis elegans]	EGT30639.1 CBN-HUM-6 protein [Caenorhabditis brenneri]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003774\|GO:0005524\|GO:0005856\|GO:0016459	GO:0005575_0.892\|GO:0110165_0.882\|GO:0005622_0.809\|GO:0008150_0.806\|GO:0043226_0.772\|GO:0016020_0.747\|GO:0009987_0.716\|GO:0043229_0.713\|GO:0071944_0.665\|GO:0005886_0.627\|GO:0003674_0.566\|GO:0005737_0.562\|GO:0016043_0.512\|GO:0071840_0.512\|GO:0043228_0.508\|GO:0043232_0.504	IPR000299+1193-1511_1853-2160+\|IPR000857+992-1203_994-1203_1102-1199_1686-1847_1744-1845+\|IPR001609+73-804_79-803_81-791_176-201_218-245_465-493+\|IPR002404+2073-2156+\|IPR011993+1412-1511_2069-2174+\|IPR014352+1279-1411_1953-2058+\|IPR019748+1966-2073_1968-2064+\|IPR019749+1849-2073+\|IPR027417+71-853+\|IPR029071+1845-1957+\|IPR035963+1272-1381_1950-2068+\|IPR036961+83-721+\|IPR038185+967-1202_1669-1850+\|IPR041793+1412-1510+\|IPR051567+135-2161+	SM00139+994-1203_1686-1847+\|SM00242+73-804+\|SM00295+1849-2073+	PF00063+81-791+Myosin_head_(motor_domain)\|PF00373+1966-2073+FERM_central_domain\|PF00784+1102-1199_1744-1845+MyTH4_domain\|PF02174+2073-2156+PTB_domain_(IRS-1_type)\|PF21989+1852-1932+RA_like_domain\|PF21998+1412-1510+Myosin-X_FERM_PH_domain-like	—	PTHR22692+135-2161+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-2195	5mv9_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.720	250505.550	8.233	55.500	26.515	12.620	47.745	52.255	15.353	11.162	43.690

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	turquoise	556.973	386.960	177.167	197.157	515.145	746.014	460.713	318.207	280.238	1176.070	792.142

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.358	-1.110	0.265	1.352	0.551	-0.686	-1.342	0.679	—	—	—	—	—

No JSON data available for plots.

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