Hg_chrom3_TN10mRNA_6150
Organism: Heterodera glycines Gene Locus: chr3:9047159-9050750 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.743 | 0.371 | 1.22 | 0.441 | 1.012 | 1.72 | 1.103 | 1.118 | 1.065 | 1.338 | 0.436 | 1.879 | 1.242 | 0.922 | 2.152 | 1.004 | 0.524 | 0.92 | 0.737 | 0.564 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5831
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.063
|
0.953
|
0.097
|
0.334
|
0.038
|
0.055
|
0.144
|
0.051
|
0.057
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008059
|
1.000
|
1.000
|
Hsc_gene_15552.t1
|
Hsc_gene_15552.t1;Hsc_gene_15553.t1
|
— |
P91428.2 Ubiquinone biosynthesis protein coq-4, mitochondrial [Caenorhabditis elegans]
|
KAI3420129.1 Component of the coenzyme Q biosynthetic pathway [Globodera pallida]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0006744
|
GO:0008150_0.781|GO:0005575_0.748|GO:0110165_0.737|GO:0009987_0.727|GO:0005622_0.672|GO:0016020_0.660|GO:0008152_0.639|GO:0005737_0.630|GO:0043226_0.620|GO:0044237_0.612|GO:0009058_0.607|GO:0043229_0.601|GO:0044249_0.584|GO:0043227_0.583|GO:0043231_0.559|GO:0044281_0.547|GO:0044283_0.524|GO:0042180_0.517|GO:0042181_0.517|GO:0006743_0.513|GO:0006744_0.513|GO:1901661_0.513|GO:1901663_0.513
|
IPR007715+87-308_89-305+|IPR027540+77-306+
|
— |
PF05019+89-305+Coenzyme_Q_(ubiquinone)_biosynthesis_protein_Coq4
|
— |
PTHR12922+87-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-72
|
1.000
|
73-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
35288.180
|
8.155
|
5.500
|
28.435
|
9.585
|
46.965
|
53.035
|
15.655
|
12.780
|
46.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
597.298
|
505.752
|
521.303
|
535.161
|
647.891
|
554.423
|
804.426
|
387.404
|
487.294
|
764.073
|
645.454
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.186
|
— | — |
0.243
|
-0.210
|
0.547
|
-0.624
|
1.197
|
— | — | — | — | — |
No JSON data available for plots.