Hg_chrom3_TN10mRNA_6151
Organism: Heterodera glycines Gene Locus: chr3:9051844-9056261 Feature type: polypeptideProtein Sequence
Length: 835
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.323 | 0.334 | 0.806 | 0.124 | 1.457 | 1.013 | 0.67 | 0.359 | 0.559 | 0.906 | 1.125 | 0.775 | 0.432 | 1.935 | 2.469 | 1.506 | 0.982 | 0.544 | 0.461 | 0.282 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5832
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,RRSSAASSTRRSRCR,RKRLKKKSKKRKKDKQ,RKERKRARKEAKRARKE,RRQQKRERKERKRARKEAK,RKRQKRERKERKRARKEAK,KRQKRERKERKRARKEAKR,KRERKERKRARKEAKRARK,KRRSPSIRRPAPERIRRPYRPLPPRRVSPQPRMPVRRKRPLLPSKSQKMTHRRRVVRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.899
|
0.045
|
0.016
|
0.226
|
0.027
|
0.009
|
0.037
|
0.020
|
0.083
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000822
|
1.000
|
5.000
|
Hsc_gene_15551.t1;Hsc_gene_15551.t2;Hsc_gene_15551.t3;Hsc_gene_15551.t4;Hsc_gene_15551.t5
|
Hsc_gene_15551.t2
|
— | — |
KAI1728404.1 g-patch domain-containing protein [Ditylenchus destructor]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-511;591-835
|
1.000
|
512-590
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
91743.280
|
11.019
|
56.000
|
33.413
|
3.832
|
55.329
|
44.671
|
20.240
|
13.174
|
53.413
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkgrey
|
1257.306
|
1234.836
|
1125.637
|
965.908
|
1097.948
|
911.390
|
884.757
|
644.893
|
835.050
|
2299.912
|
1672.114
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.364
|
-0.491
|
-0.112
|
0.153
|
-0.254
|
— |
-0.603
|
0.598
|
— | — | — | — | — |
No JSON data available for plots.