Hg_chrom3_TN10mRNA_6154
Organism: Heterodera glycines Gene Locus: chr3:9064960-9067595 Feature type: polypeptideProtein Sequence
Length: 380
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 1.224 | 0.957 | 0.363 | 1.316 | 0.877 | 0.689 | 1.053 | 1.404 | 1.351 | 1.037 | 2.012 | 1.827 | 0.607 | 1.02 | 1.015 | 0.733 | 0.758 | 0.81 | 1.084 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5835
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRTMLCNIGNLFFGFKRNR
|
— | — |
46-84
|
0.890
|
— | — |
0.000
|
— | — |
0.613
|
0.345
|
0.024
|
0.488
|
0.175
|
0.100
|
0.115
|
0.009
|
0.227
|
0.272
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008060
|
1.000
|
1.000
|
Hsc_gene_15549.t1
|
Hsc_gene_15549.t1
|
— |
Q9SIT1.1 Receptor-like kinase TMK3 [Arabidopsis thaliana]
|
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
MDH3629252
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.855|GO:0003674_0.616|GO:0005575_0.614|GO:0110165_0.614|GO:0009987_0.592|GO:0050896_0.564|GO:0016020_0.541|GO:0005622_0.525
|
IPR000719+1-346_38-337_82-334+|IPR011009+50-343+
|
SM00220+38-337+
|
PF00069+82-334+Protein_kinase_domain
|
— |
PTHR44167+71-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-380
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
43531.850
|
6.317
|
-1.000
|
27.105
|
13.421
|
47.368
|
52.632
|
13.947
|
13.158
|
43.684
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
953.333
|
6.574
|
86.361
|
50.564
|
26.276
|
43.281
|
16.406
|
298.955
|
771.047
|
3394.389
|
2270.099
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.484
|
2.806
|
-0.662
|
-0.980
|
0.737
|
-1.393
|
2.694
|
-4.054
|
— |
-3.759
|
-6.613
|
— | — |
No JSON data available for plots.