SCN Proteipedia

Hg_chrom3_TN10mRNA_6155

Organism: Heterodera glycines Gene Locus: chr3:9068068-9073875 Feature type: polypeptide

Protein Sequence

Length: 1,161

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.002	1.042	0.736	0.861	1.005	1.038	0.79	0.947	1.55	1.245	0.848	1.773	1.268	0.712	1.143	1.071	0.734	1.161	1.259	0.532	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5836	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	27-Not_Clustered	0.952

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	lysosome_vacuole	—	TKKS,RKSATEQSNGQILPKVLKK	62-82	0.998	45-77	0.988	—	—	0.000	—	—	0.114	0.099	0.035	0.193	0.445	0.556	0.468	0.009	0.504	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008061	1.000	1.000	Hsc_gene_15548.t1	Hsc_gene_15548.t1	—	Q9Z1W8.3 Potassium-transporting ATPase alpha chain 2 [Mus musculus]	KAI1704486.1 e1-E2 ATPase domain-containing protein [Ditylenchus destructor]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887	GO:0008150_0.879\|GO:0005575_0.864\|GO:0110165_0.862\|GO:0016020_0.768\|GO:0009987_0.743\|GO:0071944_0.729\|GO:0005886_0.701\|GO:0051179_0.685\|GO:0003674_0.684\|GO:0006810_0.672\|GO:0051234_0.672\|GO:0055085_0.567\|GO:0065007_0.564\|GO:0006811_0.549\|GO:0034220_0.523	IPR001757+318-460_825-934+\|IPR004014+90-172_113-167+\|IPR006068+940-1146+\|IPR008250+217-326+\|IPR018303+432-438+\|IPR023214+427-899+\|IPR023298+111-1151+\|IPR023299+437-702_440-705+\|IPR036412+428-926+\|IPR044492+411-905+\|IPR050510+59-1152+	SM00831+90-172+	PF00122+214-409+E1-E2_ATPase\|PF00689+940-1146+Cation_transporting_ATPase,_C-terminus\|PF00690+113-167+Cation_transporter/ATPase,_N-terminus\|PF00702+691-748_820-869+haloacid_dehalogenase-like_hydrolase\|PF13246+554-633+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000095+879-1158+Sodium/potassium-transporting_ATPase_subunit_alpha-1	PTHR43294+59-1152+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-36	1.000	37-1161	7ny1_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.764	128876.220	8.340	24.000	23.170	9.905	43.669	56.331	13.092	10.078	49.612

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	turquoise	899.107	627.408	1013.194	947.460	1083.758	1261.150	1790.215	2017.993	33.241	630.720	374.658

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.465	0.458	—	0.161	0.234	0.513	—	—	-4.366	5.015	—	—	—

No JSON data available for plots.

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