Hg_chrom3_TN10mRNA_6165
Organism: Heterodera glycines Gene Locus: chr3:9098889-9101809 Feature type: polypeptideProtein Sequence
Length: 564
(Signal peptide: 1-15)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.742 | 1.649 | 0.87 | 0.673 | 1.152 | 1.091 | 0.865 | 1.241 | 0.867 | 1.054 | 0.967 | 1.877 | 1.675 | 0.852 | 0.832 | 0.785 | 0.785 | 0.994 | 1.909 | 1.095 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5846
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom3_TN10mRNA_6165
|
30-Not_Clustered
|
0.602
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-15
|
0.991
|
1.000
|
0.000
|
0.000
|
0.405
|
0.393
|
0.153
|
0.526
|
0.342
|
0.322
|
0.117
|
0.079
|
0.276
|
0.566
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001219
|
3.000
|
2.000
|
Hsc_gene_15468.t1;Hsc_gene_15542.t1
|
Hsc_gene_15503.t1
|
— |
O43280.2 Trehalase [Homo sapiens]
|
KAI3414146.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.867|GO:0003674_0.811|GO:0005575_0.763|GO:0110165_0.757|GO:0008152_0.731|GO:0003824_0.699|GO:0044238_0.648|GO:0009056_0.623|GO:0016787_0.621|GO:0016020_0.581|GO:0016798_0.576|GO:0004553_0.575|GO:0015927_0.566|GO:0005975_0.544|GO:0005984_0.530|GO:0005991_0.530|GO:0005993_0.530|GO:0009311_0.530|GO:0009313_0.530|GO:0016052_0.530|GO:0046352_0.530|GO:0071944_0.508
|
IPR001661+100-536_125-552_185-203_253-270_288-305_327-344_370-386_439-455_519-532+|IPR008928+67-540+|IPR012341+66-557+|IPR018232+143-156+
|
— |
PF01204+100-536+Trehalase
|
— |
PTHR23403+125-552+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
547-564
|
1.000
|
1-546
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
64352.010
|
6.502
|
0.000
|
24.645
|
14.716
|
46.277
|
53.723
|
12.943
|
11.702
|
48.759
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkmagenta
|
2136.451
|
2.762
|
7.444
|
86.295
|
6.295
|
7.296
|
24.466
|
8.965
|
121.172
|
9202.274
|
5310.373
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.831
|
3.654
|
-3.812
|
— |
1.757
|
— |
1.590
|
-6.369
|
— |
-9.995
|
— | — |