Hg_chrom3_TN10mRNA_6166
Organism: Heterodera glycines Gene Locus: chr3:9103089-9106227 Feature type: polypeptideProtein Sequence
Length: 541
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.053 | 0.946 | 1.042 | 0.574 | 1.078 | 0.758 | 0.792 | 1.571 | 1.438 | 1.174 | 0.868 | 1.522 | 1.335 | 0.889 | 1.245 | 0.607 | 0.697 | 1.092 | 1.564 | 1.033 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5847
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6166
|
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.331
|
— | — |
0.206
|
0.481
|
0.031
|
0.251
|
0.878
|
0.306
|
0.353
|
0.074
|
0.230
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008066
|
1.000
|
1.000
|
Hsc_gene_15541.t1
|
Hsc_gene_15541.t1
|
— |
P49109.2 Flavin-containing monooxygenase 5 [Cavia porcellus]
|
KAF7640403.1 Peptidase_M3 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004499|GO:0050660|GO:0050661
|
GO:0008150_0.845|GO:0009987_0.728|GO:0003674_0.714|GO:0008152_0.641|GO:0003824_0.622|GO:0044237_0.599|GO:0005575_0.548|GO:0110165_0.548|GO:0016020_0.503|GO:0016491_0.502
|
IPR000960+2-537_4-20_28-52_81-96_106-118_143-159_199-214_298-315_317-344_367-384_384-397+|IPR002253+84-100_207-219_292-305_513-533+|IPR020946+3-531+|IPR036188+1-224_2-392_287-490+|IPR050346+3-500+
|
— |
PF00743+3-531+Flavin-binding_monooxygenase-like
|
G3DSA:3.50.50.60:FF:000159+3-395+Dimethylaniline_monooxygenase_[N-oxide-forming]
|
PTHR23023+3-500+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-541
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
61302.490
|
7.211
|
6.500
|
27.172
|
13.494
|
42.699
|
57.301
|
14.972
|
12.200
|
47.505
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1560.350
|
1711.180
|
2508.648
|
596.076
|
761.798
|
951.583
|
696.832
|
4473.892
|
1107.420
|
1608.462
|
1393.730
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.323
|
-1.659
|
-1.965
|
0.322
|
0.336
|
-0.438
|
2.133
|
-2.541
|
— | — | — | — | — |
No JSON data available for plots.