Hg_chrom3_TN10mRNA_6169
Organism: Heterodera glycines Gene Locus: chr3:9117591-9124656 Feature type: polypeptideProtein Sequence
Length: 1,568
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.742 | 0.964 | 0.719 | 0.352 | 2.232 | 1.881 | 0.653 | 0.829 | 0.624 | 0.888 | 1.198 | 2.026 | 0.585 | 0.527 | 2.043 | 1.23 | 1.14 | 0.551 | 0.638 | 0.3 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5850
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6169
|
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PKRKRIKPT,RRASSTRRTTRTEKK,KKCLEAKMEELRKIRE,KRYKLEDELFYQKEKVR,RRTGSAGTNILYRIRRE,RRLQEQCRRFRHERKRWT,KRTKTTAVEGGGRRRRTWK,RRFRHERKRWTEWLRKKYG
|
53-75
|
0.981
|
49-75
|
0.983
|
— | — |
0.000
|
— | — |
0.258
|
0.128
|
0.088
|
0.699
|
0.147
|
0.199
|
0.291
|
0.066
|
0.559
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001978
|
3.000
|
1.000
|
Hsc_gene_15538.t1
|
Hsc_gene_15538.t1
|
— | — |
KAI6191443.1 Protein SOGA2 [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR049885+598-991+
|
— | — | — |
PTHR15742+598-991+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-712;757-1568
|
1.000
|
713-756
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
180274.640
|
8.445
|
22.000
|
36.926
|
5.612
|
63.967
|
36.033
|
19.579
|
17.347
|
42.921
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3061.561
|
7322.167
|
2590.129
|
1154.374
|
774.082
|
746.208
|
344.324
|
1325.219
|
1916.697
|
6610.617
|
4598.937
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.730
|
-2.802
|
-1.056
|
-0.609
|
— |
-1.104
|
0.728
|
-1.802
|
— | — |
-2.647
|
— | — |
No JSON data available for plots.