Hg_chrom3_TN10mRNA_6176
Organism: Heterodera glycines Gene Locus: chr3:9135325-9137410 Feature type: polypeptideProtein Sequence
Length: 244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 2.287 | 0.671 | 0.283 | 1.844 | 1.681 | 0.683 | 0.82 | 1.093 | 1.052 | 0.931 | 0.964 | 0.911 | 0.236 | 1.84 | 0.82 | 0.739 | 0.497 | 1.892 | 0.603 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5855
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6176
|
28-Not_Clustered
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.375
|
0.100
|
0.006
|
0.568
|
0.062
|
0.176
|
0.385
|
0.100
|
0.102
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008070
|
1.000
|
1.000
|
Hsc_gene_15535.t1
|
Hsc_gene_15535.t1
|
— | — |
XP_049637624.1 coiled-coil domain-containing protein 102B [Suncus etruscus]
|
XP_024730798
|
0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.930|GO:0005575_0.905|GO:0110165_0.900|GO:0009987_0.880|GO:0005622_0.871|GO:0003674_0.820|GO:0043226_0.820|GO:0043229_0.814|GO:0005488_0.793|GO:0071840_0.772|GO:0016043_0.761|GO:0005515_0.751|GO:0006996_0.717|GO:0007049_0.691|GO:0007010_0.690|GO:0022402_0.690|GO:0007017_0.686|GO:0043228_0.685|GO:0043232_0.683|GO:0000226_0.681|GO:0019899_0.679|GO:0007098_0.670|GO:0010457_0.670|GO:0031023_0.670|GO:0019900_0.655|GO:0019901_0.650|GO:0120283_0.650|GO:0005856_0.584|GO:0015630_0.570|GO:0005815_0.559|GO:0005814_0.551
|
— | — | — | — |
PTHR46292+97-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60
|
1.000
|
61-244
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
28292.420
|
7.894
|
3.000
|
31.557
|
9.426
|
58.197
|
41.803
|
16.803
|
14.754
|
43.443
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
627.233
|
2752.986
|
204.352
|
196.928
|
219.910
|
572.897
|
254.401
|
725.622
|
109.100
|
814.658
|
512.276
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.985
|
-3.943
|
— | — |
1.397
|
-1.160
|
— |
-1.365
|
— | — | — | — | — |
No JSON data available for plots.