SCN Proteipedia

Hg_chrom3_TN10mRNA_6177

Organism: Heterodera glycines Gene Locus: chr3:9137715-9142467 Feature type: polypeptide

Protein Sequence

Length: 1,035

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.573	1.213	0.632	0.333	3.027	0.991	0.506	0.821	1.331	1.097	2.035	1.705	1.235	0.409	0.986	0.635	0.554	0.556	1.338	0.71	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5856	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom3_TN10mRNA_6177	30-pJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	KKRK,KRKL,KKPIELLYQKKRLGK,KKKKEEKEKTDKKEKG,KKLEEIEKRRVEKVEKR,KKEKEKHFEEAKKEKKF,KKFLMEKIIEENKQMKK,RKIGNKIYNKCVALKMTKK,KRRQFEKKLEEIEKRRVEK,KRKEEEKKKKEEKEKTDKK	12-51	0.665	—	—	—	—	0.077	—	—	0.178	0.231	0.016	0.248	0.292	0.119	0.280	0.012	0.208	0.805

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008071	1.000	1.000	Hsc_gene_15534.t1	Hsc_gene_15534.t1	—	—	KAI3420098.1 hypothetical protein GPALN_003426 [Globodera pallida]	HSU24552	0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468\|GO:0010506	GO:0005575_0.865\|GO:0110165_0.861\|GO:0008150_0.824\|GO:0009987_0.802\|GO:0005622_0.793\|GO:0043226_0.723\|GO:0003674_0.709\|GO:0043229_0.697\|GO:0016020_0.652\|GO:0005737_0.586\|GO:0003824_0.553\|GO:0140096_0.548\|GO:0016740_0.543\|GO:0016772_0.532\|GO:0004672_0.526\|GO:0016301_0.526\|GO:0016773_0.526\|GO:0050896_0.517\|GO:0065007_0.514\|GO:0005488_0.502	IPR000719+109-452_111-441+\|IPR008271+247-259+\|IPR011009+112-452+\|IPR017441+115-143+\|IPR045269+108-770+	SM00220+109-452+	PF00069+111-441+Protein_kinase_domain	—	PTHR24348+108-770+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	662-809;905-1035	2.000	1-661;810-904	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.754	122951.710	5.114	-26.500	41.546	10.242	58.454	41.546	19.903	21.643	32.464

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	green	1940.923	3.960	254.815	677.175	334.456	40.424	31.617	23.196	4973.214	4249.510	4559.669

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	5.772	7.274	1.519	-1.049	-3.033	—	—	0.588	—	-2.714	-3.503	—	—

No JSON data available for plots.

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