Hg_chrom3_TN10mRNA_6186
Organism: Heterodera glycines Gene Locus: chr3:9190467-9193723 Feature type: polypeptideProtein Sequence
Length: 527
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.214 | 0.927 | 0.759 | 0.589 | 0.569 | 1.07 | 0.7 | 0.854 | 0.843 | 2.205 | 0.345 | 1.898 | 2.108 | 0.547 | 1.278 | 1.247 | 0.622 | 1.006 | 0.73 | 0.614 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5865
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRR,KRLAEMARVYRAKRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.088
|
0.102
|
0.018
|
0.169
|
0.380
|
0.379
|
0.270
|
0.090
|
0.570
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008077
|
1.000
|
1.000
|
Hsc_gene_15516.t1
|
Hsc_gene_15516.t1
|
— | — |
KAI1714499.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.869|GO:0009987_0.841|GO:0006810_0.820|GO:0051179_0.820|GO:0051234_0.820|GO:0055085_0.776|GO:0003674_0.768|GO:0005215_0.732|GO:0022857_0.732|GO:0005575_0.704|GO:0110165_0.704|GO:0016020_0.686|GO:0005886_0.622|GO:0071944_0.622|GO:0071705_0.560|GO:0005622_0.546|GO:0006811_0.506
|
IPR036259+27-507_96-504+
|
— | — | — |
PTHR23507+12-508+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19;526-527
|
1.000
|
20-525
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
58414.160
|
8.396
|
9.500
|
17.837
|
12.334
|
38.520
|
61.480
|
10.247
|
7.590
|
48.197
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
831.150
|
4237.930
|
907.331
|
648.395
|
698.787
|
605.557
|
653.726
|
758.324
|
208.400
|
288.711
|
254.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.455
|
-2.846
|
-0.375
|
— |
-0.192
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.