Hg_chrom3_TN10mRNA_6187
Organism: Heterodera glycines Gene Locus: chr3:9196410-9198854 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 0.691 | 0.885 | 0.839 | 1.577 | 1.04 | 0.772 | 1.216 | 1.622 | 0.986 | 1.188 | 1.908 | 1.276 | 0.728 | 0.938 | 0.618 | 1.019 | 0.983 | 1.04 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5866
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.871
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRKL,RDGKRAKANAQKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.220
|
0.118
|
0.005
|
0.196
|
0.817
|
0.277
|
0.641
|
0.002
|
0.137
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003659
|
1.000
|
2.000
|
Hsc_gene_15517.t1;Hsc_gene_15517.t3
|
Hsc_gene_15517.t1;Hsc_gene_15517.t2;Hsc_gene_15517.t3
|
— |
Q8N6R0.1 eEF1A lysine and N-terminal methyltransferase [Homo sapiens]
|
KAI1730392.1 methyltransferase-like protein 13 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.812|GO:0110165_0.810|GO:0008150_0.723|GO:0005622_0.709|GO:0005737_0.700|GO:0003674_0.661|GO:0003824_0.569|GO:0008152_0.560|GO:0016020_0.538|GO:0009058_0.518
|
IPR029063+135-362_170-333+
|
— |
PF01564+163-312+Spermine/spermidine_synthase_domain
|
— |
PTHR43317+160-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-370
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
41887.190
|
6.067
|
-2.500
|
29.189
|
11.081
|
46.757
|
53.243
|
14.865
|
14.324
|
45.135
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
3500.880
|
14.120
|
523.066
|
1005.117
|
13520.755
|
11233.207
|
4328.147
|
370.637
|
68.101
|
3642.130
|
2110.403
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.982
|
6.020
|
1.053
|
3.718
|
-0.254
|
-1.367
|
-5.043
|
3.693
|
-5.852
|
4.062
|
— | — | — |
No JSON data available for plots.