Hg_chrom3_TN10mRNA_6189
Organism: Heterodera glycines Gene Locus: chr3:9200586-9204133 Feature type: polypeptideProtein Sequence
Length: 492
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.111 | 0.945 | 0.517 | 0.701 | 0.508 | 0.625 | 0.726 | 0.61 | 2.304 | 1.621 | 0.339 | 1.674 | 2.258 | 0.586 | 0.788 | 1.336 | 0.8 | 0.955 | 1.251 | 1.196 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5868
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — |
37-58
|
0.887
|
— | — | — | — |
0.000
|
— | — |
0.042
|
0.142
|
0.010
|
0.138
|
0.424
|
0.691
|
0.544
|
0.011
|
0.532
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008078
|
1.000
|
1.000
|
Hsc_gene_15518.t1
|
Hsc_gene_15518.t1
|
— |
Q22397.2 Amino acid transporter protein 6 [Caenorhabditis elegans]
|
KAI1720208.1 amino acid permease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.841|GO:0005575_0.813|GO:0110165_0.813|GO:0016020_0.782|GO:0009987_0.759|GO:0005886_0.742|GO:0071944_0.742|GO:0006810_0.733|GO:0051179_0.733|GO:0051234_0.733|GO:0055085_0.675|GO:0003674_0.670|GO:0003333_0.538|GO:0006865_0.538|GO:0005215_0.529|GO:0022857_0.529|GO:0071705_0.513
|
IPR002293+9-421+|IPR050598+4-454+
|
— |
PF13520+9-421+Amino_acid_permease
|
G3DSA:1.20.1740.10:FF:000058+4-454+Amino_Acid_Transporter
|
PTHR11785+4-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-492
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
54556.110
|
7.524
|
4.000
|
13.211
|
15.041
|
33.943
|
66.057
|
7.317
|
5.894
|
48.171
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
white
|
187.286
|
13.490
|
62.594
|
545.664
|
470.526
|
588.941
|
351.545
|
45.631
|
5.511
|
35.845
|
22.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.988
|
5.203
|
3.232
|
-0.246
|
0.339
|
-0.737
|
-3.797
|
3.086
|
— |
6.857
|
4.314
|
— | — |
No JSON data available for plots.