Hg_chrom3_TN10mRNA_6192
Organism: Heterodera glycines Gene Locus: chr3:9208707-9209251 Feature type: polypeptideProtein Sequence
Length: 143
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 1.301 | 1.526 | 0.965 | 0.233 | 1.255 | 0.999 | 1.049 | 1.243 | 1.323 | 0.954 | 2.057 | 1.36 | 0.538 | 1.142 | 0.799 | 1.146 | 0.954 | 1.076 | 0.411 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5871
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15522
|
— |
15-Not_Clustered
|
0.806
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-22
|
0.993
|
1.000
|
0.000
|
0.000
|
0.214
|
0.542
|
0.298
|
0.252
|
0.380
|
0.245
|
0.252
|
0.031
|
0.458
|
0.904
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008080
|
1.000
|
1.000
|
Hsc_gene_15522.t1
|
Hsc_gene_15522.t1
|
— |
Q8I7H9.1 Transthyretin-like protein 33 [Caenorhabditis elegans]
|
KAI1708500.1 transthyretin-like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009986
|
— |
IPR001534+12-142_31-109+|IPR038479+24-138+
|
— |
PF01060+31-109+Transthyretin-like_family
|
— |
PTHR21700+12-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-143
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
15881.250
|
8.509
|
4.500
|
23.776
|
9.790
|
46.853
|
53.147
|
13.986
|
9.790
|
53.147
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1542.938
|
749.367
|
1028.991
|
1073.556
|
1584.861
|
1983.258
|
1306.538
|
4236.449
|
503.780
|
1886.384
|
1293.840
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.229
|
0.382
|
0.170
|
0.530
|
— |
-0.593
|
— |
-1.564
|
— | — | — | — | — |