Hg_chrom3_TN10mRNA_6194
Organism: Heterodera glycines Gene Locus: chr3:9214937-9218029 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.198 | 1.198 | 1.171 | 0.592 | 1.431 | 1.1 | 0.409 | 1.288 | 0.668 | 1.914 | 1.301 | 1.01 | 0.954 | 0.66 | 0.963 | 0.797 | 0.563 | 0.65 | 1.321 | 1.01 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5873
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.671
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKK,LLKKHGRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.577
|
0.592
|
0.030
|
0.766
|
0.188
|
0.298
|
0.296
|
0.078
|
0.344
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008082
|
1.000
|
1.000
|
Hsc_gene_15524.t1
|
Hsc_gene_15524.t1
|
— |
P34560.2 Regulator of microtubule dynamics protein 1 [Caenorhabditis elegans]
|
KAF7640201.1 TPR_REGION domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.897|GO:0110165_0.897|GO:0005622_0.794|GO:0043226_0.731|GO:0043229_0.720|GO:0016020_0.590|GO:0005737_0.562|GO:0003674_0.546|GO:0043227_0.517|GO:0043231_0.507
|
IPR011990+108-233_111-211+|IPR049039+11-205+
|
— |
PF21033+11-205+Regulator_of_microtubule_dynamics_protein_1-3
|
— |
PTHR16056+3-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-233
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
26644.400
|
6.243
|
-1.000
|
30.901
|
11.159
|
49.356
|
50.644
|
15.880
|
15.021
|
43.777
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
1665.389
|
3035.844
|
860.899
|
1779.047
|
2467.941
|
1844.934
|
2371.497
|
1474.741
|
847.877
|
1462.082
|
1198.851
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.048
|
-0.908
|
1.156
|
0.440
|
-0.405
|
0.373
|
-0.433
|
0.830
|
— | — | — | — | — |
No JSON data available for plots.