Hg_chrom3_TN10mRNA_6198
Organism: Heterodera glycines Gene Locus: chr3:9236825-9239990 Feature type: polypeptideProtein Sequence
Length: 604
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 1.656 | 1.023 | 0.343 | 0.69 | 0.891 | 0.69 | 1.076 | 1.361 | 1.521 | 0.527 | 1.169 | 1.656 | 0.796 | 1.284 | 1.254 | 1.086 | 1.079 | 0.509 | 0.779 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5877
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
31-51
|
0.999
|
6-26
|
0.973
|
— | — |
0.101
|
— | — |
0.259
|
0.336
|
0.096
|
0.333
|
0.079
|
0.150
|
0.071
|
0.045
|
0.355
|
0.809
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003660
|
1.000
|
2.000
|
Hsc_gene_15507.t1;Hsc_gene_15507.t3
|
Hsc_gene_15507.t1;Hsc_gene_15507.t2;Hsc_gene_15507.t3;Hsc_gene_15508.t1
|
— | — |
KAF7632575.1 BPI2 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
— |
IPR001124+350-564_352-563+|IPR017943+71-285_340-567+|IPR032942+40-572+
|
SM00329+352-563+
|
PF02886+350-564+LBP_/_BPI_/_CETP_family,_C-terminal_domain
|
— |
PTHR10504+40-572+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-604
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
67658.110
|
7.524
|
6.500
|
21.689
|
11.424
|
47.682
|
52.318
|
11.921
|
9.768
|
51.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
339.638
|
166.455
|
30.241
|
31.081
|
653.669
|
1804.104
|
110.880
|
446.691
|
2.410
|
267.939
|
154.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.694
|
-2.558
|
— |
4.363
|
1.480
|
-4.015
|
-2.125
|
-1.865
|
-6.918
|
3.933
|
— | — | — |
No JSON data available for plots.