Hg_chrom3_TN10mRNA_6201
Organism: Heterodera glycines Gene Locus: chr3:9243529-9254473 Feature type: polypeptideProtein Sequence
Length: 1,891
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 1.82 | 0.769 | 0.474 | 1.692 | 1.18 | 0.529 | 1.111 | 1.516 | 1.379 | 1.755 | 1.804 | 1.748 | 0.397 | 0.917 | 0.71 | 0.572 | 0.481 | 0.936 | 0.747 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5879
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK,KRRDITEYNARRKLIK,KKTKKEEENNKLNEKMEKK,EKKKAKKEEKKRRKKEKKKTKKEE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.624
|
0.188
|
0.004
|
0.596
|
0.099
|
0.124
|
0.099
|
0.017
|
0.094
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008083
|
2.000
|
0.000
|
0.000
|
Hsc_gene_15505.t3
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.684|GO:0110165_0.684|GO:0005622_0.663|GO:0003674_0.646|GO:0008150_0.608|GO:0043226_0.593|GO:0016020_0.590|GO:0043229_0.578|GO:0043227_0.522|GO:0043231_0.501
|
IPR007012+1579-1713+|IPR043519+1387-1541_1389-1507+
|
— |
PF04928+1579-1713+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1402-1874+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
976-1131;1881-1891
|
2.000
|
1-975;1132-1880
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
221936.430
|
9.156
|
53.000
|
32.681
|
12.269
|
53.570
|
46.430
|
18.297
|
14.384
|
36.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
pink
|
731.679
|
37.446
|
173.917
|
122.777
|
54.900
|
34.452
|
14.595
|
82.915
|
426.806
|
2685.614
|
1717.553
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.986
|
1.577
|
-0.393
|
-1.192
|
-0.658
|
-1.231
|
1.165
|
-2.367
|
— | — |
-5.494
|
— | — |
No JSON data available for plots.