Hg_chrom3_TN10mRNA_6205
Organism: Heterodera glycines Gene Locus: chr3:9260948-9262045 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 1.098 | 0.624 | 0.444 | 0.787 | 1.211 | 1.482 | 2.146 | 0.477 | 0.638 | 0.975 | 1.262 | 1.431 | 0.743 | 2.19 | 0.429 | 0.844 | 1.171 | 1.651 | 0.884 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5883
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15468
|
— |
30-pJ2
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus|extracellular
|
— |
RHRR,KRWRFGFAGHIRRRND,RRICAANWLRVDKRWRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.514
|
0.359
|
0.153
|
0.469
|
0.132
|
0.036
|
0.095
|
0.147
|
0.108
|
0.693
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001219
|
3.000
|
2.000
|
Hsc_gene_15468.t1;Hsc_gene_15542.t1
|
— | — |
A8J4S9.1 Trehalase [Apis mellifera]
|
KAI3418039.1 Trehalase, variant 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0005575_0.797|GO:0008150_0.793|GO:0003674_0.788|GO:0110165_0.779|GO:0008152_0.715|GO:0003824_0.658|GO:0044238_0.620|GO:0009056_0.593|GO:0016787_0.591|GO:0016020_0.586|GO:0016798_0.557|GO:0004553_0.555|GO:0015927_0.547|GO:0005975_0.505
|
IPR001661+1-67_1-75+|IPR008928+2-70+|IPR012341+1-120+
|
— |
PF01204+1-67+Trehalase
|
— |
PTHR23403+1-75+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
137-233
|
1.000
|
1-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
26323.880
|
11.073
|
26.000
|
29.614
|
14.592
|
47.210
|
52.790
|
21.459
|
8.155
|
49.785
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkmagenta
|
477.598
|
0.687
|
9.181
|
27.144
|
7.959
|
4.111
|
10.741
|
6.513
|
211.727
|
1905.820
|
1179.780
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.506
|
5.164
|
1.673
|
-1.809
|
— |
1.390
|
— | — | — | — |
-5.618
|
— | — |
No JSON data available for plots.