Hg_chrom3_TN10mRNA_6208
Organism: Heterodera glycines Gene Locus: chr3:9270292-9271224 Feature type: polypeptideProtein Sequence
Length: 57
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.408 | 0.408 | 0.319 | 1.815 | 0.585 | 0.9 | 0.835 | 2.632 | 3.899 | 3.082 | 0.0 | 1.032 | 1.462 | 1.012 | 0.0 | 0.251 | 0.0 | 1.329 | 1.35 | 1.032 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5886
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.078
|
0.144
|
0.042
|
0.163
|
0.548
|
0.511
|
0.534
|
0.034
|
0.454
|
0.290
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001145
|
5.000
|
0.000
|
0.000
|
— | — |
Q20516.1 UPF0057 membrane protein F47B7.1 [Caenorhabditis elegans]
|
KAI1697918.1 proteolipid membrane potential modulator domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.639|GO:0110165_0.632|GO:0008150_0.610|GO:0050896_0.511
|
IPR000612+4-53_7-55_11-26+
|
— |
PF01679+7-55+Proteolipid_membrane_potential_modulator
|
— |
PTHR21659+4-53+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-57
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
6414.950
|
5.288
|
-1.500
|
10.526
|
15.789
|
17.544
|
82.456
|
5.263
|
5.263
|
35.088
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1422.782
|
1768.780
|
3406.479
|
646.905
|
355.367
|
1978.680
|
328.118
|
6586.324
|
569.397
|
146.130
|
327.530
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
-1.588
|
-2.289
|
-0.896
|
2.491
|
-2.583
|
1.635
|
-4.188
|
— | — | — | — | — |
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