Hg_chrom3_TN10mRNA_6211
Organism: Heterodera glycines Gene Locus: chr3:9282170-9283589 Feature type: polypeptideProtein Sequence
Length: 229
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.523 | 0.715 | 1.205 | 1.237 | 0.672 | 1.144 | 1.31 | 1.456 | 0.649 | 1.191 | 2.312 | 1.334 | 0.672 | 0.624 | 1.248 | 0.931 | 0.529 | 2.015 | 0.642 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5889
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.985
|
1.000
|
0.000
|
0.000
|
0.188
|
0.393
|
0.061
|
0.192
|
0.134
|
0.046
|
0.025
|
0.019
|
0.449
|
0.921
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008088
|
1.000
|
1.000
|
Hsc_gene_15497.t1
|
Hsc_gene_15497.t1
|
— | — |
XP_032995560.1 low affinity immunoglobulin epsilon Fc receptor-like [Lacerta agilis]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.775|GO:0005575_0.738|GO:0110165_0.738|GO:0003674_0.729|GO:0005488_0.656|GO:0050896_0.591|GO:0009987_0.589|GO:0065007_0.549|GO:0016020_0.536
|
IPR001304+59-224_67-214_79-224+|IPR016186+37-225+|IPR016187+59-227+|IPR050111+51-225+
|
SM00034+59-224+
|
PF00059+79-224+Lectin_C-type_domain
|
— |
PTHR22803+51-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-229
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
25399.750
|
6.994
|
2.000
|
24.891
|
12.227
|
48.472
|
51.528
|
13.537
|
11.354
|
51.528
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
487.281
|
3.184
|
1443.374
|
232.099
|
155.916
|
801.669
|
48.865
|
2539.190
|
21.751
|
156.428
|
98.709
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.602
|
6.051
|
-2.529
|
-0.606
|
2.378
|
-4.027
|
1.559
|
-5.558
|
— | — | — | — | — |