Hg_chrom3_TN10mRNA_6212
Organism: Heterodera glycines Gene Locus: chr3:9293913-9299426 Feature type: polypeptideProtein Sequence
Length: 704
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.156 | 0.981 | 0.735 | 1.373 | 0.947 | 0.659 | 0.568 | 1.042 | 0.787 | 0.753 | 0.585 | 1.026 | 0.574 | 0.696 | 2.658 | 1.397 | 0.861 | 1.311 | 0.46 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5890
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom3_TN10mRNA_6212
|
17-Not_Clustered
|
0.871
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKIVLRVARKSSKAKKE,KKREAAVFSIKGQSKTLKR,KTLKRTGENIKGKRRGLVEGKKIVLRVARKSSKAKK
|
— | — | — | — |
1-21
|
0.967
|
0.616
|
0.000
|
0.000
|
0.209
|
0.107
|
0.033
|
0.375
|
0.088
|
0.078
|
0.070
|
0.028
|
0.178
|
0.865
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003662
|
2.000
|
1.000
|
Hsc_gene_22671.t1
|
— | — | — |
XP_027231195.1 macrophage mannose receptor 1-like [Penaeus vannamei]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.955|GO:0110165_0.955|GO:0016020_0.884|GO:0071944_0.764|GO:0008150_0.754|GO:0005886_0.730|GO:0050896_0.616|GO:0043226_0.515
|
IPR001304+340-503_348-494_360-504_537-700_545-691_558-701+|IPR016186+285-510_526-701+|IPR016187+338-506_535-702+|IPR018378+478-502_675-699+|IPR050111+517-702+
|
SM00034+340-503_537-700+
|
PF00059+360-504_558-701+Lectin_C-type_domain
|
— |
PTHR22803+517-702+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-323
|
1.000
|
324-704
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
76062.940
|
4.391
|
-33.000
|
23.153
|
8.097
|
58.949
|
41.051
|
9.517
|
13.636
|
60.085
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
2962.492
|
132.046
|
1011.553
|
526.017
|
63.790
|
36.581
|
296.690
|
106.650
|
14942.066
|
939.354
|
6940.516
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.709
|
1.856
|
-0.835
|
-3.076
|
-0.788
|
3.027
|
1.448
|
1.614
|
4.182
|
-4.665
|
— | — | — |