Hg_chrom3_TN10mRNA_6213
Organism: Heterodera glycines Gene Locus: chr3:9300758-9303024 Feature type: polypeptideProtein Sequence
Length: 265
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.141 | 1.141 | 0.343 | 0.911 | 0.692 | 0.968 | 1.482 | 1.132 | 0.922 | 0.714 | 0.515 | 1.332 | 1.153 | 1.597 | 0.77 | 1.24 | 1.175 | 1.029 | 1.742 | 0.555 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5891
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6213
|
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.967
|
1.000
|
0.000
|
0.000
|
0.130
|
0.266
|
0.046
|
0.325
|
0.133
|
0.117
|
0.089
|
0.008
|
0.264
|
0.964
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008089
|
1.000
|
1.000
|
Hsc_gene_15495.t1
|
Hsc_gene_15495.t1
|
— |
P81113.1 Snaclec alboaggregin-A subunit beta [Trimeresurus albolabris]
|
AFM37301.1 C-type lectin [Rotylenchulus reniformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.761|GO:0005575_0.650|GO:0110165_0.647|GO:0003674_0.568|GO:0050896_0.568|GO:0009987_0.527
|
IPR001304+93-260_101-251_113-261+|IPR016186+86-261+|IPR016187+90-263+|IPR018378+235-259+|IPR050111+75-263+
|
SM00034+93-260+
|
PF00059+113-261+Lectin_C-type_domain
|
— |
PTHR22803+75-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-82;192-265
|
1.000
|
83-191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.970
|
27782.400
|
8.168
|
6.000
|
15.472
|
10.566
|
40.000
|
60.000
|
9.434
|
6.038
|
62.642
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
569.805
|
91.263
|
1164.731
|
114.992
|
186.186
|
1182.055
|
10.345
|
2048.834
|
677.179
|
185.610
|
396.282
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.447
|
— |
-3.233
|
0.663
|
2.682
|
-6.825
|
0.693
|
-7.487
|
— | — | — | — | — |