Hg_chrom3_TN10mRNA_6215
Organism: Heterodera glycines Gene Locus: chr3:9311905-9315506 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 1.59 | 0.57 | 1.081 | 0.855 | 1.753 | 1.119 | 0.285 | 1.203 | 0.693 | 0.475 | 1.341 | 1.108 | 0.767 | 0.814 | 1.14 | 1.681 | 0.82 | 2.411 | 0.587 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5893
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6215
|
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
29-63
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.136
|
0.120
|
0.045
|
0.280
|
0.117
|
0.123
|
0.064
|
0.028
|
0.269
|
0.957
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003662
|
2.000
|
1.000
|
Hsc_gene_22671.t1
|
Hsc_gene_15493.t1
|
— | — |
XP_063048519.1 macrophage mannose receptor 1-like, partial [Engraulis encrasicolus]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.861|GO:0005575_0.759|GO:0110165_0.749|GO:0009987_0.684|GO:0003674_0.626|GO:0050896_0.618|GO:0005488_0.544
|
IPR001304+1-139_1-149_3-148_182-346_190-337_203-347+|IPR016186+1-149_171-347+|IPR016187+1-151_180-348+|IPR018378+123-147_321-345+|IPR050111+162-348+
|
SM00034+3-148_182-346+
|
PF00059+1-149_203-347+Lectin_C-type_domain
|
— |
PTHR22803+162-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;79-122
|
2.000
|
8-78;123-351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
38179.660
|
5.148
|
-3.000
|
15.954
|
9.687
|
47.863
|
52.137
|
7.692
|
8.262
|
58.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
161.732
|
46.641
|
183.114
|
100.887
|
22.857
|
45.295
|
15.626
|
184.100
|
606.092
|
28.565
|
276.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.750
|
0.975
|
-0.756
|
-2.176
|
1.003
|
-1.524
|
1.920
|
-3.415
|
4.380
|
— | — | — | — |
No JSON data available for plots.