Hg_chrom3_TN10mRNA_6218
Organism: Heterodera glycines Gene Locus: chr3:9320230-9322040 Feature type: polypeptideProtein Sequence
Length: 184
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 0.253 | 1.383 | 0.562 | 0.725 | 1.394 | 1.229 | 0.815 | 1.57 | 1.763 | 1.565 | 0.959 | 1.208 | 0.732 | 1.553 | 0.466 | 0.713 | 0.659 | 0.418 | 0.32 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5896
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6218
|
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.232
|
0.471
|
0.052
|
0.758
|
0.134
|
0.101
|
0.074
|
0.398
|
0.233
|
0.216
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000398
|
4.000
|
4.000
|
Hsc_gene_15509.t1;Hsc_gene_15509.t2;Hsc_gene_15514.t1;Hsc_gene_15514.t2
|
Hsc_gene_15514.t1;Hsc_gene_15514.t2
|
— |
O60733.2 85/88 kDa calcium-independent phospholipase A2 [Homo sapiens]
|
KAI3420087.1 85/88 kDa calcium-independent phospholipase A2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0047499
|
GO:0008150_0.919|GO:0003674_0.778|GO:0005575_0.729|GO:0110165_0.725|GO:0009987_0.721|GO:0005622_0.657|GO:0003824_0.651|GO:0050896_0.635|GO:0008152_0.616|GO:0016787_0.608|GO:0005737_0.607|GO:0044238_0.597|GO:0016788_0.596|GO:0016020_0.594|GO:0016298_0.582|GO:0052689_0.582|GO:0043226_0.561|GO:0043229_0.556|GO:0004620_0.546|GO:0044237_0.530|GO:0006629_0.525|GO:0043227_0.519|GO:0043231_0.512
|
IPR002641+20-130_20-184+|IPR016035+18-150+|IPR047148+17-158+
|
— |
PF01734+20-130+Patatin-like_phospholipase
|
— |
PTHR24139+17-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;181-184
|
1.000
|
5-180
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.563
|
20526.040
|
10.418
|
12.500
|
31.522
|
7.609
|
45.652
|
54.348
|
19.565
|
11.957
|
42.935
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
86.387
|
58.967
|
112.491
|
60.734
|
50.647
|
88.175
|
92.534
|
104.010
|
101.169
|
89.230
|
94.347
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
— |
-0.781
|
— |
0.815
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.