Hg_chrom3_TN10mRNA_6220
Organism: Heterodera glycines Gene Locus: chr3:9326261-9336758 Feature type: polypeptideProtein Sequence
Length: 2,303
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.586 | 1.555 | 0.797 | 0.494 | 1.896 | 1.381 | 0.434 | 0.999 | 1.505 | 1.309 | 1.849 | 1.941 | 1.508 | 0.359 | 0.762 | 0.695 | 0.698 | 0.586 | 1.202 | 0.741 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5898
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom3_TN10mRNA_6220
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKFVETKRNEKNLRK,KRLLGKKMLKKFRKL,EQKKKEEKMAKEKEQKEKEKEKVAKDKEKKEEKMAKEKEQKEKEKEEVAKEKEQKEKMKIKQQKRKAKKEEEEKQKKSEK
|
— | — | — | — |
1-21
|
0.809
|
1.000
|
0.000
|
0.000
|
0.550
|
0.215
|
0.012
|
0.605
|
0.159
|
0.139
|
0.099
|
0.011
|
0.106
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008092
|
1.000
|
1.000
|
Hsc_gene_15490.t1
|
Hsc_gene_15490.t1
|
— |
Q56XM9.1 Nuclear poly(A) polymerase 3 [Arabidopsis thaliana]
|
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.779|GO:0110165_0.774|GO:0005622_0.770|GO:0043226_0.723|GO:0043229_0.702|GO:0016020_0.701|GO:0043227_0.646|GO:0008150_0.626|GO:0043231_0.580|GO:0009987_0.548|GO:0003674_0.532|GO:0005634_0.510
|
IPR007012+1997-2143+|IPR043519+1801-1941_1822-1943+
|
— |
PF04928+1997-2143+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1478-2244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1360-1531
|
2.000
|
1-1359;1532-2303
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
271211.920
|
7.773
|
27.000
|
33.695
|
11.507
|
54.885
|
45.115
|
17.933
|
15.762
|
36.040
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
980.247
|
39.808
|
256.931
|
253.640
|
54.048
|
30.319
|
30.234
|
55.274
|
4328.820
|
771.872
|
2296.278
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.462
|
2.537
|
— |
-2.260
|
-0.821
|
— |
0.760
|
-0.727
|
2.630
|
-3.950
|
-3.607
|
— | — |