Hg_chrom3_TN10mRNA_6233
Organism: Heterodera glycines Gene Locus: chr3:9390922-9391967 Feature type: polypeptideProtein Sequence
Length: 224
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 1.142 | 0.568 | 0.462 | 1.116 | 1.603 | 2.285 | 0.67 | 1.091 | 0.905 | 0.676 | 1.313 | 1.488 | 0.601 | 1.549 | 0.893 | 0.512 | 0.676 | 0.0 | 0.394 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5911
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
4.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
SGGRKSGGGRGGGAGGGRKNGPGRGGGGRGGGGR
|
— | — | — | — |
1-26
|
0.951
|
1.000
|
0.000
|
0.000
|
0.459
|
0.203
|
0.114
|
0.576
|
0.472
|
0.052
|
0.161
|
0.023
|
0.146
|
0.171
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001056
|
4.000
|
1.000
|
Hsc_gene_13472.t1
|
— | — |
Q7PT10.3 Heat shock protein 83 [Anopheles gambiae]
|
ACR57216.1 Hsp90 [Heterodera glycines]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.832|GO:0110165_0.827|GO:0008150_0.700|GO:0003674_0.644|GO:0009987_0.622|GO:0005622_0.616|GO:0016020_0.610|GO:0005737_0.596|GO:0043226_0.560|GO:0005488_0.552|GO:0050896_0.531
|
IPR001404+20-87+|IPR019805+39-48+|IPR020575+19-39_40-62+|IPR036890+17-92_24-86+
|
— | — | — |
PTHR11528+20-87+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
123-224
|
1.000
|
1-122
|
4gqt_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
23580.410
|
9.566
|
6.500
|
23.214
|
8.036
|
43.750
|
56.250
|
13.393
|
9.821
|
53.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
20.677
|
0.613
|
0.610
|
0.629
|
0.630
|
1.015
|
2.029
|
0.560
|
0.000
|
88.181
|
50.389
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |