SCN Proteipedia

Hg_chrom3_TN10mRNA_6236

Organism: Heterodera glycines Gene Locus: chr3:9401837-9407161 Feature type: polypeptide

Protein Sequence

Length: 487

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.931	1.003	1.008	0.92	1.198	1.0	0.587	1.643	0.821	1.471	0.684	0.966	1.198	0.908	1.09	1.085	1.044	0.964	1.106	0.966	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5914	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KKKITRELVTTILSRKPKM	43-64	0.982	—	—	—	—	0.000	—	—	0.222	0.167	0.009	0.561	0.383	0.446	0.621	0.073	0.255	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008099	1.000	1.000	Hsc_gene_15482.t1	Hsc_gene_15481.t1	—	P56377.1 AP-1 complex subunit sigma-2 [Homo sapiens]	KAF7637743.1 Clat_adaptor_s domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525\|GO:0006886\|GO:0015031\|GO:0016192\|GO:0030117\|GO:0030121\|GO:0035615	GO:0005575_0.935\|GO:0110165_0.935\|GO:0005622_0.846\|GO:0016020_0.806\|GO:0008150_0.779\|GO:0009987_0.720\|GO:0043226_0.712\|GO:0005737_0.689\|GO:0071944_0.686\|GO:0043229_0.685\|GO:0005886_0.661\|GO:0043227_0.652\|GO:0043231_0.642\|GO:0051179_0.588\|GO:0051234_0.551	IPR000804+387-397+\|IPR006689+2-214_15-149+\|IPR011012+331-470+\|IPR016635+332-471+\|IPR022775+331-470+\|IPR027417+10-324_15-167+\|IPR044733+333-475+	SM00177+1-180+\|SM00178+2-214+	PF00025+15-149+ADP-ribosylation_factor_family\|PF01217+331-470+Clathrin_adaptor_complex_small_chain	G3DSA:3.30.450.60:FF:000005+331-487+AP_complex_subunit_sigma	PTHR11753+332-471+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	141-287	2.000	1-140;288-487	1w63_X	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.526	54784.020	5.842	-6.000	25.873	12.320	48.049	51.951	13.142	12.731	50.513

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	999.892	760.831	892.396	798.650	876.678	982.243	1612.219	924.157	1194.155	911.222	1032.479

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	0.179	0.725	—	0.946	—	—	—	—	—

No JSON data available for plots.

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