Hg_chrom3_TN10mRNA_6239
Organism: Heterodera glycines Gene Locus: chr3:9411605-9412566 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.098 | 2.067 | 0.505 | 2.107 | 0.741 | 0.57 | 1.058 | 1.389 | 0.988 | 1.051 | 0.758 | 1.307 | 1.543 | 0.962 | 0.34 | 1.349 | 0.82 | 0.842 | 0.855 | 0.49 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5917
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
cell_membrane
|
— | — | — | — | — | — | — |
0.921
|
0.292
|
1.000
|
— |
0.080
|
0.049
|
0.024
|
0.233
|
0.217
|
0.463
|
0.286
|
0.048
|
0.778
|
0.302
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008102
|
1.000
|
1.000
|
Hsc_gene_15478.t1
|
Hsc_gene_15478.t1
|
— | — |
KAI3420050.1 hypothetical protein GPALN_003383 [Globodera pallida]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-180
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
19131.750
|
6.891
|
1.500
|
16.667
|
11.111
|
42.222
|
57.778
|
9.444
|
7.222
|
61.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
83.054
|
3.234
|
4.813
|
2.997
|
11.037
|
244.595
|
73.039
|
286.219
|
3.438
|
126.057
|
73.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.851
|
4.479
|
-1.734
|
— |
-1.824
|
— | — | — | — | — |