SCN Proteipedia

Hg_chrom3_TN10mRNA_6242

Organism: Heterodera glycines Gene Locus: chr3:9424094-9426915 Feature type: polypeptide

Protein Sequence

Length: 476

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.099	1.221	0.993	0.869	1.331	0.7	0.85	1.786	1.12	0.937	0.732	1.359	1.109	0.808	0.9	0.96	0.723	1.114	0.646	1.421	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5920	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.410	0.295	0.143	0.680	0.106	0.224	0.145	0.072	0.151	0.094

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008105	1.000	1.000	Hsc_gene_15475.t1	Hsc_gene_15475.t1;Hsc_gene_7188.t1;Hsc_gene_7191.t1	—	P36220.1 Tubulin alpha chain [Torpedo marmorata]	KAF7635158.1 UDPGT domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017	GO:0005575_0.861\|GO:0110165_0.855\|GO:0005622_0.742\|GO:0008150_0.696\|GO:0043226_0.626\|GO:0009987_0.617\|GO:0016020_0.584\|GO:0043229_0.576\|GO:0005737_0.526	IPR000217+7-466_15-35_81-100_123-134_136-160_162-180_181-202_206-219_220-240_408-436+\|IPR002452+23-38_116-129_148-156_176-188_189-200_242-254_302-317_349-370_375-388_388-407_413-429_450-466+\|IPR003008+8-241_77-274+\|IPR008280+274-465+\|IPR017975+170-176+\|IPR018316+276-421_291-420+\|IPR023123+412-464+\|IPR036525+7-272_7-296+\|IPR037103+297-411+	SM00864+77-274+\|SM00865+276-421+	PF00091+8-241+Tubulin/FtsZ_family,_GTPase_domain\|PF03953+291-420+Tubulin_C-terminal_domain	G3DSA:1.10.287.600:FF:000005+412-476+Tubulin_alpha_chain\|G3DSA:3.30.1330.20:FF:000001+297-411+Tubulin_alpha_chain\|G3DSA:3.40.50.1440:FF:000007+6-296+Tubulin_alpha_chain	PTHR11588+7-466+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	452-476	1.000	1-451	1z2b_C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.558	52879.460	5.223	-11.500	26.261	13.235	45.378	54.622	12.815	13.445	52.521

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	374.405	119.424	30.481	62.440	35.524	247.725	295.659	129.527	307.554	1062.064	738.702

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.196	-1.072	1.141	-0.844	2.814	0.266	-1.052	1.338	—	—	—	—	-10.179

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