Hg_chrom3_TN10mRNA_6244
Organism: Heterodera glycines Gene Locus: chr3:9430527-9434785 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.821 | 0.866 | 0.535 | 1.149 | 0.588 | 0.503 | 0.817 | 0.882 | 1.917 | 1.351 | 0.564 | 2.076 | 1.852 | 0.83 | 0.68 | 1.064 | 1.286 | 1.396 | 1.056 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5922
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
38-97
|
0.930
|
— | — | — | — |
0.000
|
— | — |
0.029
|
0.147
|
0.023
|
0.143
|
0.432
|
0.757
|
0.440
|
0.007
|
0.592
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008107
|
1.000
|
1.000
|
Hsc_gene_15473.t1
|
Hsc_gene_15473.t1
|
— |
Q9SS86.2 Lysine histidine transporter-like 4 [Arabidopsis thaliana]
|
KAI1717414.1 transmembrane amino acid transporter protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.745|GO:0005575_0.742|GO:0110165_0.737|GO:0009987_0.685|GO:0016020_0.681|GO:0003674_0.668|GO:0006810_0.630|GO:0051179_0.630|GO:0051234_0.630|GO:0055085_0.589|GO:0005215_0.547|GO:0022857_0.547|GO:0005622_0.513|GO:0005737_0.513
|
IPR013057+45-408+
|
— |
PF01490+45-408+Transmembrane_amino_acid_transporter_protein
|
G3DSA:1.20.1740.10:FF:000052+41-465+Lysine_histidine_transporter-like_3
|
PTHR48017+47-449+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-510
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.735
|
56004.030
|
7.779
|
7.500
|
15.294
|
12.549
|
36.275
|
63.725
|
8.824
|
6.471
|
52.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
purple
|
1481.081
|
378.247
|
603.226
|
898.630
|
2123.085
|
3606.785
|
1497.390
|
3798.498
|
168.637
|
1513.554
|
937.161
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.445
|
1.111
|
0.683
|
1.209
|
0.779
|
-1.260
|
— |
-1.203
|
-3.297
|
— | — | — | — |
No JSON data available for plots.