Hg_chrom3_TN10mRNA_6245
Organism: Heterodera glycines Gene Locus: chr3:9435946-9438125 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.964 | 1.807 | 0.565 | 1.429 | 1.468 | 1.993 | 0.308 | 0.777 | 0.921 | 0.84 | 1.57 | 0.61 | 0.864 | 1.295 | 1.798 | 0.814 | 0.764 | 0.393 | 1.196 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5923
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRVLDQLERQWRVKKAKR,RRVLDQLERQWRVKKAKRT,RVKKAKRTSKSSERTPEEEEAAEAKARKRREK
|
— | — |
31-58
|
0.968
|
— | — |
0.000
|
— | — |
0.816
|
0.184
|
0.014
|
0.375
|
0.041
|
0.008
|
0.011
|
0.032
|
0.034
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008108
|
1.000
|
1.000
|
Hsc_gene_15472.t1
|
Hsc_gene_15472.t1
|
— |
G5ECK3.1 DM domain-containing protein mab-23 [Caenorhabditis elegans]
|
KAF7632589.1 DM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355|GO:0043565
|
GO:0008150_0.934|GO:0005575_0.930|GO:0110165_0.930|GO:0065007_0.910|GO:0050789_0.906|GO:0005622_0.903|GO:0009987_0.899|GO:0050794_0.898|GO:0043226_0.863|GO:0043229_0.853|GO:0016020_0.852|GO:0008152_0.827|GO:0009058_0.827|GO:0009059_0.827|GO:0010467_0.827|GO:0043170_0.827|GO:0044237_0.827|GO:0044249_0.827|GO:0032501_0.817|GO:0019222_0.816|GO:0031323_0.809|GO:0032502_0.808|GO:0060255_0.804|GO:0048856_0.797|GO:0043227_0.790|GO:0009889_0.787|GO:0010556_0.787|GO:0031326_0.787|GO:0048519_0.784|GO:0007275_0.778|GO:0010468_0.778|GO:0043231_0.772|GO:0048523_0.768|GO:0030154_0.767|GO:0048869_0.767|GO:0005634_0.763|GO:0048731_0.759|GO:0051239_0.722|GO:0009892_0.720|GO:0050793_0.717|GO:0007399_0.716|GO:0031324_0.714|GO:0010605_0.713|GO:0022008_0.710|GO:0022414_0.709|GO:0009653_0.707|GO:0009890_0.705|GO:0010558_0.705|GO:0031327_0.705|GO:0003006_0.699|GO:0048699_0.698|GO:0030182_0.697|GO:0048609_0.688|GO:0010629_0.685|GO:0022603_0.680|GO:2000241_0.680|GO:0007548_0.679|GO:0007610_0.678|GO:0045165_0.676|GO:0007617_0.674|GO:0019098_0.674|GO:0001709_0.670|GO:0045138_0.670|GO:0046661_0.670|GO:0048663_0.670|GO:0048664_0.670|GO:0050795_0.670|GO:0060179_0.670|GO:0090598_0.670|GO:0110037_0.670|GO:1902435_0.670
|
IPR001275+60-95+|IPR036407+58-97_60-97+
|
— |
PF00751+60-95+DM_DNA_binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-146
|
1.000
|
147-193
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
22334.360
|
10.194
|
15.500
|
32.642
|
7.254
|
58.549
|
41.451
|
20.725
|
11.917
|
45.596
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
36.997
|
45.247
|
50.530
|
15.380
|
8.752
|
26.994
|
26.467
|
89.935
|
2.764
|
61.049
|
36.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.695
|
-1.610
|
— |
1.631
|
— |
1.635
|
-1.621
|
— | — | — | — | — |
No JSON data available for plots.