Hg_chrom3_TN10mRNA_6247
Organism: Heterodera glycines Gene Locus: chr3:9439424-9440581 Feature type: polypeptideProtein Sequence
Length: 235
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.089 | 2.375 | 0.774 | 0.88 | 0.922 | 0.655 | 1.013 | 1.277 | 0.662 | 0.805 | 1.161 | 2.503 | 1.3 | 0.573 | 0.695 | 0.547 | 0.977 | 0.645 | 3.928 | 1.001 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5925
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
VAP2|AY0286391#X12jg8256t1
|
Hsc_gene_15470;Hsc_gene_15409
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
extracellular
|
— | — | — | — | — | — |
1-19
|
0.985
|
1.000
|
1.000
|
1.000
|
0.228
|
0.406
|
0.037
|
0.328
|
0.134
|
0.051
|
0.077
|
0.020
|
0.338
|
0.907
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000200
|
7.000
|
4.000
|
Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4
|
Hsc_gene_15386.t1;Hsc_gene_15409.t1;Hsc_gene_15409.t2;Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4;Hsc_gene_15470.t1
|
— |
Q05108.1 Venom allergen 5 [Dolichovespula arenaria]
|
AAK21961.1 secreted venom allergen-like protein vap2 [Heterodera glycines]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
GO:0005575_0.758|GO:0110165_0.754|GO:0008150_0.726|GO:0016020_0.512
|
IPR001283+33-178_67-85_114-127_141-157+|IPR002413+24-40_67-85_140-159+|IPR014044+28-180_34-176+|IPR018244+142-152+|IPR035940+10-177_14-181+
|
SM00198+28-180+
|
PF00188+34-176+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+33-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-235
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
26775.260
|
8.234
|
6.000
|
23.404
|
15.745
|
45.957
|
54.043
|
13.617
|
9.787
|
51.915
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
2482.622
|
7.561
|
591.281
|
70.144
|
11.914
|
508.652
|
7.577
|
24916.057
|
1398.270
|
20.326
|
610.874
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.063
|
3.075
|
-2.968
|
-2.596
|
5.433
|
-6.066
|
5.515
|
-11.546
|
6.011
|
-4.131
|
— | — | — |