Hg_chrom3_TN10mRNA_6248
Organism: Heterodera glycines Gene Locus: chr3:9442254-9444715 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.547 | 1.094 | 0.969 | 0.757 | 1.358 | 0.804 | 0.672 | 1.254 | 1.672 | 1.483 | 1.282 | 2.213 | 0.958 | 0.603 | 1.152 | 0.851 | 0.874 | 0.855 | 0.482 | 0.922 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5926
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.328
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.509
|
0.243
|
0.009
|
0.716
|
0.111
|
0.222
|
0.087
|
0.013
|
0.178
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008110
|
1.000
|
1.000
|
Hsc_gene_15469.t1
|
Hsc_gene_15469.t1
|
— |
O01775.1 Serine/threonine-protein kinase nekl-2 [Caenorhabditis elegans]
|
KAI3420040.1 S_TKc protein [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.869|GO:0005575_0.758|GO:0110165_0.755|GO:0009987_0.751|GO:0005622_0.674|GO:0003674_0.650|GO:0065007_0.616|GO:0050789_0.602|GO:0003824_0.563|GO:0050794_0.547|GO:0016740_0.542|GO:0016020_0.529|GO:0043226_0.529|GO:0140096_0.502
|
IPR000719+36-291_36-293+|IPR008271+158-170+|IPR011009+32-300+|IPR017441+42-67+|IPR051131+34-298+
|
SM00220+36-293+
|
PF00069+36-291+Protein_kinase_domain
|
— |
PTHR44899+34-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-319
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
36511.350
|
7.924
|
6.000
|
30.094
|
9.718
|
49.216
|
50.784
|
16.614
|
13.480
|
42.633
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
329.282
|
57.739
|
336.728
|
269.674
|
483.894
|
898.047
|
277.754
|
937.816
|
103.626
|
139.772
|
124.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.316
|
2.087
|
-0.212
|
0.811
|
0.908
|
-1.683
|
— |
-1.616
|
— | — | — | — | — |
No JSON data available for plots.