Hg_chrom3_TN10mRNA_6249
Organism: Heterodera glycines Gene Locus: chr3:9447579-9450023 Feature type: polypeptideProtein Sequence
Length: 530
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.667 | 0.858 | 0.651 | 1.258 | 1.258 | 0.764 | 0.755 | 0.797 | 0.969 | 1.286 | 2.109 | 1.415 | 0.943 | 0.924 | 0.701 | 0.65 | 1.058 | 2.467 | 1.054 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5927
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15468
|
— |
30-Not_Clustered
|
0.737
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.276
|
0.376
|
0.045
|
0.548
|
0.205
|
0.206
|
0.121
|
0.024
|
0.400
|
0.593
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001219
|
3.000
|
2.000
|
Hsc_gene_15468.t1;Hsc_gene_15542.t1
|
— | — |
Q8MMG9.1 Trehalase [Pimpla hypochondriaca]
|
KAI3414146.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.852|GO:0003674_0.794|GO:0005575_0.784|GO:0110165_0.783|GO:0008152_0.723|GO:0003824_0.658|GO:0044238_0.655|GO:0009056_0.612|GO:0016787_0.604|GO:0016020_0.599|GO:0016798_0.565|GO:0004553_0.563|GO:0015927_0.559|GO:0005975_0.538|GO:0005984_0.527|GO:0005991_0.527|GO:0005993_0.527|GO:0009311_0.527|GO:0009313_0.527|GO:0016052_0.527|GO:0046352_0.527
|
IPR001661+32-199_203-518_204-502_219-236_254-271_293-310_336-352_405-421_485-498+|IPR008928+9-506+|IPR012341+6-203_204-523+|IPR018232+155-168+
|
— |
PF01204+32-199_204-502+Trehalase
|
— |
PTHR23403+203-518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
513-530
|
1.000
|
1-512
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
61277.910
|
8.144
|
8.000
|
26.792
|
13.396
|
47.736
|
52.264
|
14.528
|
12.264
|
46.792
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
1357.573
|
6.733
|
44.486
|
83.070
|
12.761
|
10.777
|
30.292
|
24.383
|
1023.641
|
5091.962
|
3348.396
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.497
|
3.488
|
1.009
|
-2.738
|
— |
1.507
|
— | — |
-2.425
|
-3.487
|
-8.251
|
— | — |
No JSON data available for plots.