Hg_chrom3_TN10mRNA_6252
Organism: Heterodera glycines Gene Locus: chr3:9452477-9455289 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.828 | 0.609 | 0.357 | 0.753 | 0.546 | 2.015 | 3.249 | 0.328 | 0.291 | 0.354 | 0.298 | 0.514 | 0.303 | 2.813 | 0.446 | 0.811 | 0.501 | 0.529 | 0.168 | 0.385 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5929
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
33-73
|
0.920
|
— | — |
0.000
|
— | — |
0.057
|
0.044
|
0.010
|
0.126
|
0.511
|
0.305
|
0.319
|
0.002
|
0.617
|
0.269
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003665
|
2.000
|
1.000
|
Hsc_gene_15466.t1
|
Hsc_gene_15466.t1
|
— | — |
KAF7626069.1 COLlagen [Meloidogyne graminicola]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+26-78_29-78+|IPR008160+319-375_384-442+|IPR050632+257-456+
|
SM01088+26-78+
|
PF01391+319-375_384-442+Collagen_triple_helix_repeat_(20_copies)|PF01484+29-78+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+257-456+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;103-458
|
1.000
|
14-102
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
41615.150
|
5.057
|
-3.500
|
10.044
|
3.275
|
29.258
|
70.742
|
4.803
|
5.240
|
76.638
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
967.794
|
1742.777
|
21.278
|
11.795
|
43.747
|
5554.967
|
56.083
|
2294.872
|
3.084
|
584.715
|
335.444
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.579
|
-7.344
|
-0.747
|
1.859
|
7.003
|
-6.628
|
-1.389
|
-5.216
|
— | — | — | — | — |
No JSON data available for plots.