Hg_chrom3_TN10mRNA_6254
Organism: Heterodera glycines Gene Locus: chr3:9465611-9469115 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.177 | 1.177 | 0.478 | 0.977 | 0.405 | 0.779 | 0.627 | 1.316 | 0.945 | 1.34 | 0.429 | 1.905 | 1.068 | 1.363 | 1.074 | 1.186 | 1.062 | 1.442 | 0.934 | 1.191 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5931
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
40-60
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.081
|
0.083
|
0.028
|
0.100
|
0.416
|
0.254
|
0.120
|
0.028
|
0.827
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008113
|
1.000
|
1.000
|
Hsc_gene_15464.t1
|
Hsc_gene_15464.t1
|
— | — |
KAF7623624.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.935|GO:0009987_0.891|GO:0065007_0.821|GO:0050789_0.797|GO:0050794_0.774|GO:0003674_0.773|GO:0005575_0.749|GO:0110165_0.741|GO:0050896_0.716|GO:0023052_0.713|GO:0007154_0.710|GO:0051716_0.691|GO:0007165_0.659|GO:0071944_0.655|GO:0005886_0.648|GO:0016020_0.648|GO:0005488_0.639|GO:0007186_0.575|GO:0038023_0.520|GO:0060089_0.520
|
IPR000276+22-46_37-385_55-76_95-117_101-117_179-202_315-339_367-393+|IPR017452+37-385+
|
— |
PF00001+37-385+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+24-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;261-306;478-494
|
2.000
|
10-260;307-477
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.916
|
54018.770
|
9.178
|
21.500
|
15.789
|
11.741
|
38.664
|
61.336
|
10.729
|
5.061
|
57.287
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
533.266
|
295.911
|
235.900
|
112.061
|
43.144
|
71.003
|
71.420
|
576.674
|
26.034
|
1786.222
|
1031.856
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.557
|
-1.538
|
-0.965
|
-1.403
|
0.729
|
— |
2.921
|
-2.875
|
-6.214
|
— |
-4.934
|
— | — |
No JSON data available for plots.