Hg_chrom3_TN10mRNA_6256
Organism: Heterodera glycines Gene Locus: chr3:9473098-9476145 Feature type: polypeptideProtein Sequence
Length: 586
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.151 | 1.191 | 0.869 | 0.471 | 0.853 | 0.656 | 0.772 | 1.28 | 0.834 | 1.614 | 1.138 | 1.405 | 1.659 | 1.05 | 0.731 | 0.804 | 0.727 | 1.06 | 0.788 | 1.004 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5933
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6256
|
22-Not_Clustered
|
0.652
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
endoplasmic_reticulum
|
chloroplast
|
KKRK
|
— | — |
16-49
|
0.981
|
1-20
|
0.999
|
1.000
|
1.000
|
1.000
|
0.262
|
0.240
|
0.043
|
0.416
|
0.701
|
0.286
|
0.301
|
0.052
|
0.198
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001982
|
1.000
|
3.000
|
Hsc_gene_15461.t1;Hsc_gene_15462.t1;Hsc_gene_15555.t1
|
Hsc_gene_15461.t1;Hsc_gene_15462.t1
|
— |
Q6GMR7.1 Fatty-acid amide hydrolase 2 [Homo sapiens]
|
KAF7630885.1 Amidase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.733|GO:0110165_0.733|GO:0008150_0.688|GO:0003674_0.625|GO:0005622_0.574|GO:0016020_0.529|GO:0003824_0.509
|
IPR020556+264-295+|IPR023631+125-562+|IPR036928+118-574_120-571+|IPR052739+120-581+
|
— |
PF01425+125-562+Amidase
|
— |
PTHR43372+120-581+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-586
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
65005.230
|
8.719
|
14.500
|
23.549
|
12.969
|
41.297
|
58.703
|
13.652
|
9.898
|
50.171
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
12217.405
|
8.961
|
5.551
|
64.469
|
82.663
|
8982.408
|
103.627
|
132067.500
|
23.107
|
440.622
|
261.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.925
|
2.711
|
3.650
|
— |
6.775
|
-6.427
|
3.780
|
-10.175
|
-4.381
|
— | — | — | — |