Hg_chrom3_TN10mRNA_6257
Organism: Heterodera glycines Gene Locus: chr3:9476928-9478538 Feature type: polypeptideProtein Sequence
Length: 410
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.851 | 0.964 | 0.887 | 0.505 | 1.748 | 0.876 | 0.465 | 0.732 | 1.734 | 1.45 | 1.589 | 2.296 | 1.694 | 0.61 | 0.747 | 1.15 | 0.4 | 0.628 | 0.75 | 0.43 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5934
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_15460
|
Hg_chrom3_TN10mRNA_6257
|
21-pJ2_J3
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-24
|
0.785
|
1.000
|
0.000
|
0.000
|
0.560
|
0.443
|
0.008
|
0.628
|
0.181
|
0.143
|
0.175
|
0.016
|
0.112
|
0.218
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003666
|
2.000
|
1.000
|
Hsc_gene_15460.t1
|
Hsc_gene_15460.t1
|
— | — | — |
GLB34986
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-410
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
46881.440
|
6.048
|
-2.000
|
30.976
|
10.000
|
49.024
|
50.976
|
15.610
|
15.366
|
39.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
731.961
|
40.298
|
22.297
|
285.225
|
126.880
|
17.296
|
29.172
|
14.549
|
1754.545
|
1685.527
|
1715.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.087
|
2.687
|
3.789
|
-1.199
|
-2.861
|
— | — |
1.143
|
— | — | — |
-3.448
|
— |