Hg_chrom3_TN10mRNA_6260
Organism: Heterodera glycines Gene Locus: chr3:9482769-9483919 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.617 | 1.448 | 0.305 | 1.032 | 1.475 | 0.369 | 1.106 | 1.18 | 1.614 | 0.939 | 0.521 | 1.967 | 0.596 | 1.896 | 0.885 | 0.943 | 0.805 | 0.681 | 0.651 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5937
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6260
|
13-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
RRRR,RRRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.145
|
0.355
|
0.052
|
0.528
|
0.110
|
0.458
|
0.268
|
0.015
|
0.642
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003667
|
2.000
|
1.000
|
Hsc_gene_15458.t1
|
Hsc_gene_15458.t1;Hsc_gene_15458.t2
|
— |
Q2KI69.1 Kv channel-interacting protein 4 [Bos taurus]
|
KAI1725797.1 EF-hand domain pair domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.819|GO:0110165_0.814|GO:0008150_0.778|GO:0003674_0.694|GO:0009987_0.680|GO:0016020_0.662|GO:0005488_0.619|GO:0005622_0.600|GO:0065007_0.587|GO:0050789_0.572|GO:0071944_0.561|GO:0005886_0.549|GO:0050794_0.529
|
IPR002048+92-127+|IPR011992+41-212+|IPR028846+41-215+
|
— | — | — |
PTHR23055+41-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
26372.130
|
8.970
|
5.500
|
31.858
|
12.389
|
52.212
|
47.788
|
17.699
|
14.159
|
42.035
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
470.092
|
561.643
|
1076.469
|
315.018
|
85.371
|
255.251
|
43.878
|
629.553
|
666.502
|
444.083
|
539.405
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
-0.971
|
-1.664
|
-1.918
|
1.597
|
-2.531
|
1.199
|
-3.701
|
— | — | — | — | — |
No JSON data available for plots.