Hg_chrom3_TN10mRNA_6263
Organism: Heterodera glycines Gene Locus: chr3:9490003-9491390 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 1.039 | 1.219 | 1.156 | 1.304 | 1.576 | 0.466 | 1.676 | 0.869 | 1.359 | 0.423 | 1.643 | 1.241 | 0.752 | 1.368 | 0.718 | 0.916 | 0.931 | 1.719 | 0.657 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5939
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6263
|
22-Not_Clustered
|
0.683
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.667
|
0.518
|
0.005
|
0.491
|
0.234
|
0.242
|
0.159
|
0.200
|
0.086
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008116
|
1.000
|
1.000
|
Hsc_gene_15456.t1
|
Hsc_gene_15456.t1
|
— |
Q9CQM5.1 Thioredoxin domain-containing protein 17 [Mus musculus]
|
KAI3420029.1 Thioredoxin domain-containing protein 17 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0047134
|
GO:0003674_0.843|GO:0003824_0.716|GO:0140096_0.675|GO:0016491_0.664|GO:0016667_0.655|GO:0015035_0.650|GO:0015036_0.650|GO:0016668_0.650|GO:0047134_0.650
|
IPR010357+23-122+|IPR036249+31-122+|IPR045108+25-124+
|
— |
PF06110+23-122+Thioredoxin_domain-containing_protein_17-like,_thioredoxin_domain
|
— |
PTHR12452+25-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
20576.260
|
4.885
|
-6.000
|
27.374
|
12.291
|
48.603
|
51.397
|
12.849
|
14.525
|
47.486
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
violet
|
605.133
|
193.529
|
506.293
|
300.431
|
379.480
|
1709.751
|
265.799
|
633.470
|
528.286
|
755.458
|
658.098
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.159
|
0.497
|
-0.645
|
0.305
|
2.188
|
-2.677
|
-1.537
|
-1.111
|
— | — | — | — | — |
No JSON data available for plots.