Hg_chrom3_TN10mRNA_6274
Organism: Heterodera glycines Gene Locus: chr3:9512371-9513433 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.099 | 1.288 | 0.543 | 1.05 | 1.009 | 0.656 | 1.969 | 0.875 | 1.064 | 1.074 | 2.779 | 2.187 | 0.757 | 1.125 | 0.675 | 0.645 | 1.074 | 1.211 | 0.232 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5950
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.180
|
0.838
|
0.080
|
0.281
|
0.079
|
0.038
|
0.091
|
0.025
|
0.102
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003668
|
1.000
|
2.000
|
Hsc_gene_15443.t1;Hsc_gene_15443.t2
|
Hsc_gene_15443.t1;Hsc_gene_15443.t2
|
— |
Q9TZH6.3 Putative pterin-4-alpha-carbinolamine dehydratase [Caenorhabditis elegans]
|
XP_054164033.1 probable pterin-4-alpha-carbinolamine dehydratase [Oppia nitens]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006729|GO:0008124
|
GO:0008150_0.827|GO:0009987_0.764|GO:0005575_0.718|GO:0110165_0.709|GO:0005622_0.677|GO:0016020_0.634|GO:0008152_0.633|GO:0043226_0.628|GO:0003674_0.627|GO:0043229_0.607|GO:0044238_0.603|GO:0044237_0.602|GO:0009058_0.600|GO:0043227_0.582|GO:0043231_0.579|GO:0044249_0.575|GO:0005737_0.561|GO:0005488_0.521
|
IPR001533+26-122_27-122_29-120+|IPR036428+23-125_27-123+
|
— |
PF01329+29-120+Pterin_4_alpha_carbinolamine_dehydratase
|
— |
PTHR12599+27-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-127
|
1f93_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
14558.710
|
6.969
|
1.500
|
29.921
|
14.173
|
47.244
|
52.756
|
16.535
|
13.386
|
46.457
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
598.088
|
154.003
|
453.884
|
499.091
|
1090.039
|
881.197
|
377.432
|
469.538
|
0.000
|
1144.693
|
654.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.329
|
1.559
|
0.247
|
1.094
|
-0.292
|
-1.212
|
-1.016
|
— |
-10.967
|
9.820
|
— | — | — |
No JSON data available for plots.