Hg_chrom3_TN10mRNA_6277
Organism: Heterodera glycines Gene Locus: chr3:9545841-9549040 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.227 | 1.124 | 0.919 | 0.455 | 0.916 | 1.409 | 0.576 | 1.319 | 0.684 | 1.247 | 0.5 | 1.293 | 0.427 | 1.014 | 1.974 | 1.664 | 0.901 | 0.866 | 0.507 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5953
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
RHDKRQR,RRTASELGIDEETLRRLVR
|
51-71
|
0.988
|
37-70
|
0.964
|
— | — |
0.000
|
— | — |
0.194
|
0.346
|
0.045
|
0.483
|
0.175
|
0.308
|
0.369
|
0.160
|
0.641
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008125
|
1.000
|
1.000
|
Hsc_gene_15446.t1
|
Hsc_gene_15446.t1
|
— |
P18613.1 Ras-related protein rapA [Dictyostelium discoideum]
|
KAI1726994.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525|GO:0007165|GO:0016020
|
GO:0008150_0.897|GO:0005575_0.864|GO:0110165_0.863|GO:0009987_0.821|GO:0065007_0.762|GO:0050789_0.750|GO:0050794_0.736|GO:0005622_0.727|GO:0050896_0.701|GO:0003674_0.683|GO:0016020_0.660|GO:0051716_0.656|GO:0023052_0.606|GO:0007154_0.605|GO:0007165_0.582|GO:0005488_0.554|GO:0071944_0.502
|
IPR001806+183-455_190-344_190-382+|IPR005225+189-321+|IPR020849+189-381+|IPR027417+179-408_185-389+
|
SM00173+185-385+|SM00174+190-344+|SM00175+188-385+
|
PF00071+190-382+Ras_family
|
— |
PTHR24070+189-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-193;455-455
|
1.000
|
194-454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
50090.140
|
9.781
|
17.000
|
26.154
|
6.813
|
53.626
|
46.374
|
15.604
|
10.549
|
54.725
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
408.678
|
725.195
|
762.755
|
464.968
|
258.608
|
308.356
|
432.561
|
1623.698
|
25.021
|
53.146
|
41.092
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.157
|
-0.779
|
-0.605
|
-0.877
|
0.267
|
0.499
|
2.296
|
-1.767
|
— | — | — | — | — |
No JSON data available for plots.