Hg_chrom3_TN10mRNA_6279
Organism: Heterodera glycines Gene Locus: chr3:9553235-9560994 Feature type: polypeptideProtein Sequence
Length: 1,118
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.822 | 1.269 | 0.634 | 0.709 | 1.118 | 1.124 | 0.873 | 0.939 | 1.093 | 1.463 | 0.515 | 1.368 | 1.615 | 0.998 | 1.442 | 0.984 | 0.938 | 0.867 | 1.238 | 0.631 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5955
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6279
|
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-23
|
0.725
|
0.550
|
6.000
|
6.000
|
0.051
|
0.050
|
0.022
|
0.090
|
0.258
|
0.399
|
0.305
|
0.013
|
0.907
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008126
|
1.000
|
1.000
|
Hsc_gene_15449.t1
|
Hsc_gene_15449.t1
|
— |
H2L0Q3.2 Gamma-aminobutyric acid type B receptor subunit 1 [Caenorhabditis elegans]
|
KAI1725841.1 receptor family ligand binding region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0004965|GO:0007186|GO:0016020
|
GO:0005575_0.933|GO:0110165_0.933|GO:0008150_0.910|GO:0016020_0.890|GO:0071944_0.859|GO:0005886_0.851|GO:0009987_0.845|GO:0003674_0.813|GO:0065007_0.803|GO:0050789_0.786|GO:0050896_0.769|GO:0050794_0.754|GO:0051716_0.709|GO:0007154_0.680|GO:0023052_0.680|GO:0007165_0.654|GO:0005622_0.629|GO:0060089_0.606|GO:0038023_0.604|GO:0004888_0.589|GO:0007267_0.588|GO:0007186_0.579|GO:0004930_0.541|GO:0032991_0.536|GO:0030054_0.534|GO:0023051_0.532|GO:0010646_0.531|GO:0048519_0.528|GO:0048523_0.513
|
IPR001828+51-407+|IPR002455+25-947+|IPR017978+454-573_667-825_676-845+|IPR028082+29-441+
|
— |
PF00003+454-573_667-825+7_transmembrane_sweet-taste_receptor_of_3_GCPR|PF01094+51-407+Receptor_family_ligand_binding_region
|
G3DSA:3.40.50.2300:FF:000056+152-311+Gamma-aminobutyric_acid_type_B_receptor_subunit_1
|
PTHR10519+25-947+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
899-1118
|
1.000
|
1-898
|
9jr0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
125498.540
|
7.739
|
13.500
|
22.540
|
11.449
|
44.991
|
55.009
|
12.343
|
10.197
|
48.927
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
235.630
|
208.367
|
1041.033
|
251.088
|
79.259
|
75.415
|
127.389
|
261.106
|
24.751
|
245.947
|
151.149
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.091
|
— |
-1.943
|
-1.696
|
— |
0.767
|
1.689
|
-0.893
|
— |
3.540
|
— | — | — |