SCN Proteipedia

Hg_chrom3_TN10mRNA_6287

Organism: Heterodera glycines Gene Locus: chr3:9593424-9597148 Feature type: polypeptide

Protein Sequence

Length: 593

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.118	1.608	0.889	0.814	0.927	2.811	0.763	1.602	0.899	1.117	0.818	1.389	0.703	0.713	0.654	1.47	0.94	0.562	0.13	0.198	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5963	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom3_TN10mRNA_6287	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	34-54	0.947	43-67	0.995	—	—	0.000	—	—	0.809	0.113	0.030	0.379	0.046	0.062	0.055	0.035	0.080	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008131	1.000	1.000	Hsc_gene_15435.t1	Hsc_gene_15435.t1;Hsc_gene_15435.t2	—	A0A5E4M3Q4.1 Zinc finger protein syd-9 [Caenorhabditis elegans]	XP_024503480.1 Zinc finger, C2H2 domain and Zinc finger C2H2-type/integrase DNA-binding domain and Zinc finger, C2H2-like domain-containing protein [Strongyloides ratti];CEF64279.1 Zinc finger, C2H2 domain and Zinc finger C2H2-type/integrase DNA-binding domain and Zinc finger, C2H2-like domain-containing protein [Strongyloides ratti]	No	-0.600

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.913\|GO:0110165_0.913\|GO:0005622_0.885\|GO:0043226_0.851\|GO:0016020_0.844\|GO:0043229_0.841\|GO:0043227_0.803\|GO:0005634_0.772\|GO:0043231_0.772\|GO:0031974_0.628\|GO:0031981_0.628\|GO:0043233_0.628\|GO:0070013_0.628\|GO:0005654_0.605\|GO:0016604_0.552\|GO:0016607_0.546	IPR013087+27-49_27-54_29-49_55-77_55-83_395-419_395-422_396-416_397-419+\|IPR036236+25-77+	SM00355+27-49_55-77_395-419+	PF00096+27-49_55-77_396-416+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:002484+25-50+Protein_CBR-LSY-2	PTHR14003+21-449+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;108-286;326-593	2.000	2-107;287-325	9hju_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.744	64172.100	6.371	-1.500	22.260	6.577	56.155	43.845	11.804	10.455	53.626

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	289.724	385.930	550.120	293.913	280.732	475.033	187.048	669.843	225.104	32.731	115.176

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.283	-0.530	-0.796	—	0.775	-1.335	0.394	-1.699	—	—	—	—	—

No JSON data available for plots.

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