Hg_chrom3_TN10mRNA_6289
Organism: Heterodera glycines Gene Locus: chr3:9602082-9609734 Feature type: polypeptideProtein Sequence
Length: 1,199
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.183 | 0.986 | 0.345 | 1.96 | 1.476 | 0.626 | 0.876 | 0.945 | 0.879 | 1.466 | 1.227 | 1.043 | 0.802 | 1.277 | 1.072 | 0.902 | 0.733 | 0.706 | 0.564 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5965
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom3_TN10mRNA_6289
|
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KRRK,KKKKK,KRKKK,RPSRK,KKIKSLERLQRRAKF,KRNDEQKMEQMPKKYGKK,KKVFTAPVEENEESKGKKH,KKHFGFTIKILPELEDKRR
|
— | — | — | — |
1-18
|
0.983
|
1.000
|
0.000
|
0.000
|
0.400
|
0.132
|
0.010
|
0.731
|
0.108
|
0.126
|
0.169
|
0.049
|
0.268
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003671
|
1.000
|
2.000
|
Hsc_gene_15433.t1;Hsc_gene_15433.t2
|
Hsc_gene_15433.t1;Hsc_gene_15433.t2
|
— | — |
XP_020883176.1 RING-H2 finger protein ATL33 [Arabidopsis lyrata subsp. lyrata]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001841+221-270_222-270+|IPR013083+207-286+|IPR052788+196-326+
|
SM00184+222-270+|SM01197+218-279+
|
PF13639+221-270+Ring_finger_domain
|
— |
PTHR45798+196-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
412-706;910-1199
|
2.000
|
1-411;707-909
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
136832.010
|
6.222
|
-4.500
|
34.862
|
8.340
|
58.716
|
41.284
|
17.681
|
17.181
|
45.371
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1801.389
|
276.852
|
694.313
|
343.986
|
87.302
|
53.639
|
44.474
|
72.686
|
8373.318
|
1011.117
|
4166.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.097
|
0.176
|
-0.905
|
-2.010
|
-0.689
|
— | — |
-0.566
|
2.938
|
-4.450
|
-3.364
|
— | — |