Hg_chrom3_TN10mRNA_6290
Organism: Heterodera glycines Gene Locus: chr3:9612552-9613947 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 0.811 | 0.423 | 1.103 | 0.436 | 1.193 | 3.288 | 0.291 | 0.517 | 0.079 | 0.352 | 0.855 | 0.404 | 3.857 | 0.712 | 1.246 | 0.429 | 0.573 | 0.224 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5966
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6290
|
26-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.042
|
0.044
|
0.010
|
0.111
|
0.360
|
0.301
|
0.312
|
0.001
|
0.662
|
0.405
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008132
|
1.000
|
1.000
|
Hsc_gene_15432.t1
|
Hsc_gene_6621.t1
|
F23H12.4b
|
Q21184.3 Putative cuticle collagen 155 [Caenorhabditis elegans]
|
KAF7632318.1 Collagen alpha-5(IV) chain [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.940|GO:0032501_0.856|GO:0032502_0.851|GO:0048856_0.851|GO:0007275_0.825|GO:0005575_0.781|GO:0110165_0.771|GO:0030312_0.736|GO:0071944_0.736|GO:0040002_0.670|GO:0042335_0.670|GO:0031012_0.644|GO:0062023_0.644
|
IPR002486+14-66_17-66+|IPR008160+195-253_260-317+|IPR050632+20-327+
|
SM01088+14-66+
|
PF01391+195-253_260-317+Collagen_triple_helix_repeat_(20_copies)|PF01484+17-66+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+20-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
70-344
|
1.000
|
1-69
|
9ius_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
32452.460
|
7.917
|
4.000
|
11.337
|
5.233
|
30.814
|
69.186
|
6.395
|
4.942
|
77.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
4555.473
|
981.370
|
16.268
|
27.111
|
3197.161
|
38219.230
|
13.507
|
6452.042
|
84.116
|
1527.100
|
908.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.140
|
-5.314
|
0.846
|
6.850
|
3.594
|
-11.456
|
-2.686
|
-8.747
|
-4.315
|
— | — | — | — |
No JSON data available for plots.