Hg_chrom3_TN10mRNA_6292
Organism: Heterodera glycines Gene Locus: chr3:9622322-9623396 Feature type: polypeptideProtein Sequence
Length: 81
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.431 | 0.574 | 0.673 | 0.0 | 1.646 | 3.799 | 0.294 | 0.617 | 1.92 | 1.001 | 0.935 | 2.179 | 2.401 | 0.475 | 2.016 | 1.411 | 0.0 | 0.187 | 0.95 | 0.726 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5968
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_6292
|
— | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.797
|
0.144
|
0.005
|
0.453
|
0.067
|
0.029
|
0.092
|
0.006
|
0.030
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008134
|
1.000
|
1.000
|
Hsc_gene_15411.t1
|
Hsc_gene_15411.t1
|
— |
P20269.4 Homeobox protein ceh-5 [Caenorhabditis elegans]
|
KAI1725702.1 homeobox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.903|GO:0009987_0.811|GO:0065007_0.674|GO:0005575_0.672|GO:0032501_0.667|GO:0050789_0.661|GO:0110165_0.660|GO:0032502_0.640|GO:0050794_0.640|GO:0048856_0.635|GO:0005622_0.610|GO:0007275_0.557|GO:0003674_0.549|GO:0005488_0.549|GO:0043226_0.530|GO:0043229_0.530
|
IPR000047+42-51_51-67+|IPR001356+13-75_18-69_19-69_19-71+|IPR009057+18-71+|IPR017970+46-69+|IPR020479+35-46_50-60_60-69+|IPR050848+18-69+
|
SM00389+13-75+
|
PF00046+19-69+Homeodomain
|
— |
PTHR24333+18-69+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
76-81
|
1.000
|
1-75
|
3zob_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
9914.280
|
9.731
|
2.500
|
30.864
|
13.580
|
58.025
|
41.975
|
17.284
|
13.580
|
25.926
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
2.437
|
0.307
|
7.332
|
6.013
|
2.097
|
3.881
|
0.406
|
1.374
|
0.000
|
2.632
|
1.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.351
|
4.159
|
— |
-1.562
|
— |
-3.252
|
— | — | — | — | — | — | — |
No JSON data available for plots.