Hg_chrom3_TN10mRNA_6298
Organism: Heterodera glycines Gene Locus: chr3:9664554-9666164 Feature type: polypeptideProtein Sequence
Length: 357
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.042 | 1.954 | 0.458 | 0.869 | 0.14 | 0.862 | 0.534 | 0.56 | 2.241 | 1.514 | 0.255 | 1.812 | 2.256 | 0.646 | 0.915 | 1.08 | 0.827 | 1.061 | 1.508 | 1.236 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5974
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.101
|
0.041
|
0.031
|
0.081
|
0.408
|
0.204
|
0.257
|
0.022
|
0.893
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008138
|
1.000
|
1.000
|
Hsc_gene_15417.t1
|
Hsc_gene_15417.t1
|
— | — |
KAI1731304.1 serpentine type 7TM GPCR chemoreceptor srsx domain-containing protein [Ditylenchus destructor]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+39-297+|IPR017452+45-283+|IPR019424+40-297+|IPR047130+32-304+
|
SM01381+39-297+
|
PF10320+40-297+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+32-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
342-357
|
1.000
|
1-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
40211.260
|
9.154
|
12.000
|
10.644
|
15.406
|
35.014
|
64.986
|
7.283
|
3.361
|
49.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
476.231
|
7.629
|
30.131
|
10.299
|
30.324
|
523.715
|
12.847
|
10.592
|
35.831
|
1822.059
|
1056.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.754
|
— |
-1.443
|
1.524
|
4.126
|
-5.342
|
-5.723
|
— |
-5.784
|
— |
-5.314
|
— | — |
No JSON data available for plots.