Hg_chrom3_TN10mRNA_6299
Organism: Heterodera glycines Gene Locus: chr3:9666453-9667614 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.157 | 2.545 | 0.905 | 1.716 | 0.829 | 0.765 | 1.244 | 0.746 | 0.332 | 0.807 | 1.131 | 2.049 | 1.106 | 0.67 | 0.508 | 0.569 | 0.897 | 0.377 | 3.827 | 1.171 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5975
|
— | — |
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
VAP2|AY028639.1#X12jg8256.t1
|
VAP2|AY0286391#X12jg8256t1
|
Hsc_gene_15470;Hsc_gene_15409
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.082
|
0.156
|
0.014
|
0.167
|
0.110
|
0.034
|
0.027
|
0.010
|
0.103
|
0.961
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000200
|
7.000
|
4.000
|
Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4
|
Hsc_gene_15386.t1;Hsc_gene_15409.t1;Hsc_gene_15409.t2;Hsc_gene_15418.t1;Hsc_gene_15418.t2;Hsc_gene_15418.t3;Hsc_gene_15418.t4;Hsc_gene_15470.t1
|
— |
Q16937.1 Ancylostoma secreted protein [Ancylostoma caninum]
|
QLK97561.1 venom allergen [Heterodera glycines]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576
|
GO:0005575_0.752|GO:0110165_0.747|GO:0008150_0.669
|
IPR001283+22-177_56-74_103-116_130-146_160-173+|IPR002413+13-29_56-74_129-148+|IPR014044+17-173_23-165+|IPR018244+131-141+|IPR035940+6-201_12-180+
|
SM00198+17-173+
|
PF00188+23-165+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+22-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-34
|
1.000
|
35-201
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
22450.100
|
7.076
|
1.500
|
21.393
|
14.428
|
44.776
|
55.224
|
11.443
|
9.950
|
56.716
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
darkgreen
|
14680.333
|
16.687
|
6031.492
|
407.849
|
65.818
|
410.435
|
24.381
|
19492.206
|
71998.781
|
309.045
|
31033.218
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.270
|
4.471
|
-3.780
|
-2.665
|
2.655
|
-4.059
|
5.470
|
-9.499
|
7.757
|
-7.316
|
— | — | — |
No JSON data available for plots.